LOCUS BC032547 2529 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox A1, mRNA (cDNA clone MGC:45232
IMAGE:5537563), complete cds.
ACCESSION BC032547
VERSION BC032547.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2529)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2529)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC032547.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: k Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497507.
FEATURES Location/Qualifiers
source 1..2529
/db_xref="H-InvDB:HIT000041596"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45232 IMAGE:5537563"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2529
/gene="HOXA1"
/gene_synonym="BSAS"
/gene_synonym="MGC45232"
/db_xref="GeneID:3198"
/db_xref="HGNC:HGNC:5099"
/db_xref="MIM:142955"
CDS 63..1070
/gene="HOXA1"
/gene_synonym="BSAS"
/gene_synonym="MGC45232"
/codon_start=1
/product="homeobox A1"
/protein_id="AAH32547.1"
/db_xref="GeneID:3198"
/db_xref="HGNC:HGNC:5099"
/db_xref="MIM:142955"
/translation="MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSA
NSCGGDDRFLVGRGVQIGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQ
NFSAPYSPYALNQEADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI
HHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTG
KVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIW
FQNRRMKQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTS
H"
BASE COUNT 679 a 655 c 539 g 656 t
ORIGIN
1 aggaagtgag aaagttggca cagtcacgcc gggcttcgca ggaccaggtc actcagtgac
61 agatggacaa tgcaagaatg aactccttcc tggaataccc catacttagc agtggcgact
121 cggggacctg ctcagcccga gcctacccct cggaccatag gattacaact ttccagtcgt
181 gcgcggtcag cgccaacagt tgcggcggcg acgaccgctt cctagtgggc aggggggtgc
241 agatcggttc gccccaccac caccaccacc accaccatca ccacccccag ccggctacct
301 accagacttc cgggaacctg ggggtgtcct actcccactc aagttgtggt ccaagctatg
361 gctcacagaa cttcagtgcg ccttacagcc cctacgcgtt aaatcaggaa gcagacgtaa
421 gtggtgggta cccccagtgc gctcccgctg tttactctgg aaatctctca tctcccatgg
481 tccagcatca ccaccaccac cagggttatg ctgggggcgc ggtgggctcg cctcaataca
541 ttcaccactc atatggacag gagcaccaga gcctggccct ggctacgtat aataactcct
601 tgtcccctct ccacgccagc caccaagaag cctgtcgctc ccccgcatcg gagacatctt
661 ctccagcgca gacttttgac tggatgaaag tcaaaagaaa ccctcccaaa acagggaaag
721 ttggagagta cggctacctg ggtcaaccca acgcggtgcg caccaacttc actaccaagc
781 agctcacgga actggagaag gagttccact tcaacaagta cctgacgcgc gcccgcaggg
841 tggagatcgc tgcatccctg cagctcaacg agacccaagt gaagatctgg ttccagaacc
901 gccgaatgaa gcaaaagaaa cgtgagaagg agggtctctt gcccatctct ccggccaccc
961 cgccaggaaa cgacgagaag gccgaggaat cctcagagaa gtccagctct tcgccctgcg
1021 ttccttcccc ggggtcttct acctcagaca ctctgactac ctcccactga ggcggctcca
1081 gccccagaca acagcccagg catctccttg ggctgggact tcttacccaa agcacatgct
1141 tagcttatct ttctttccat ttacagtctc tttcttcctt tctaatccta tctggggagc
1201 tcctggccag gataatatat ttgcagataa ttctggacca gagacttggt gcggggttaa
1261 caccttcatc cagattgggt gccagcatac attttctggt gggccttaac atccctcctg
1321 cttttaggag aattcacaga acctactgtt cctttcagat gaccttttgg aaaatagttc
1381 cctttgccaa cagaaacatg ccagaaggaa tcttctcatc ttttatctaa ctatatgtac
1441 agctctcccc tcccttgtcc ttgaaagtag gatatagcga aaggcgagtc caggagctca
1501 ggaagaagag atgcactata tgtttacaca attaattcat cccttaattt aagtcatttt
1561 catgtgtgtg agtttgctgg ttgtaaatac tttgtcctaa gagatttatc tttatacaga
1621 ttttctagaa atgtttaggt tactaaaaca gggtgggcaa actctctaaa ctggtacaat
1681 tttataggtg aaagaaaaaa ttccctcatt taaacccaat cagatgcctc agagggtagc
1741 cttgatttgt tcttacagtt aagaagccct gcagagcaca aacttcagaa acccggcttc
1801 ctgtgctaag tctttcccaa tctctacccc tttcttctcg ggccaccctc tgtttaaaat
1861 ttgtgctggg ttattcagaa cctaaaagta ttattcaaac caatttcttc cttccacagt
1921 tatcttagct ggatataatg tattttcagc tcaattgtta atgtgatgga tggcacaatg
1981 aatgtatatt ttgtgttatt cgtgaatagt cttttgcatg tcgcacaatg tttgatgtcc
2041 ccaaagtacc acactgagtt ctatcagtta tcctttgtga gcctatgata ttccccattt
2101 cctgtacaat catgaacagc tctgagatcc tggagtgata tgatccagag cagagtttac
2161 gggtcttagg atgtctgtaa taaataaata tactcaagtt tcaggtatgc ttaagcatcc
2221 gtgtatttgg ctgggctaca atttgttaat tcctatgaag ttggcacatt tcatgagggg
2281 aaagggagaa gggtggtaaa tattttcaaa gagatgggcc ttttcttgaa taaaagttaa
2341 taacagctcc tttattataa tcaaagctca taatggaaaa aaagactgat gaagaaattt
2401 atgaagcaga tttatttttg aaacaaacat ggatacttcc tgggtcaagt gctaaccttt
2461 tcacctccaa ctggatgttg acgtatatat aaacagaact cccttcaaaa gccaaaaaaa
2521 aaaaaaaaa
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