LOCUS BC032429 3224 bp mRNA linear HUM 09-MAY-2005
DEFINITION Homo sapiens FYVE, RhoGEF and PH domain containing 3, mRNA (cDNA
clone MGC:40367 IMAGE:5244790), complete cds.
ACCESSION BC032429
VERSION BC032429.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3224)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3224)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: p Column: 19.
FEATURES Location/Qualifiers
source 1..3224
/db_xref="H-InvDB:HIT000041534"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40367 IMAGE:5244790"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3224
/gene="FGD3"
/gene_synonym="FLJ00004"
/gene_synonym="ZFYVE5"
/db_xref="GeneID:89846"
CDS 348..2525
/gene="FGD3"
/gene_synonym="FLJ00004"
/gene_synonym="ZFYVE5"
/codon_start=1
/product="FGD3 protein"
/protein_id="AAH32429.1"
/db_xref="GeneID:89846"
/translation="MESGRGSSTPPGPIAALGMPDTGPGSSSLGKLQALPVGPRAHCG
DPVSLAAAGDGSPDIGPTGELSGSLKIPNRDSGIDSPSSSVAGENFPCEEGLEAGPSP
TVLGAHAEMALDSQVPKVTPQEEADSDVGEEPDSENTPQKADKDAGLAQHSGPQKLLH
IAQELLHTEETYVKRLHLLDQVFCTRLTDAGIPPEVIMGIFSNISSIHRFHGQFLLPE
LKTRITEEWDTNPRLGDILQKLAPFLKMYGEYVKNFDRAVGLVSTWTQRSPLFKDVIH
SIQKQEVCGNLTLQHHMLEPVQRVPRYELLLKDYLKRLPQDAPDRKDAERSLELISTA
ANHSNAAIRKVEKMHKLLEVYEQLGGEEDIVNPANELIKEGQIQKLSAKNGTPQDRHL
FLFNSMILYCVPKLRLMGQKFSVREKMDISGLQVQDIVKPNTAHTFIITGRKRSLELQ
TRTEEEKKEWIQIIQATIEKHKQNSETFKAFGGAFSQDEDPSLSPDMPITSTSPVEPV
VTTEGSSGAAGLEPRKLSSKTRRDKEKQSCKSCGETFNSITKRRHHCKLCGAVICGKC
SEFKAENSRQSRVCRDCFLTQPVAPESTEKTPTADPQPSLLCGPLRLSESGETWSEVW
AAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWY
LSASSAELQQQWLETLSTAAHGDTAQDSPGALQLQVPMGAAAP"
BASE COUNT 758 a 980 c 942 g 544 t
ORIGIN
1 ctgtgagcga cctccccggg gctcctctgg aagcggctcc ggcaagtatc gagtttgcct
61 gtgcggagct gggggagcct ccggctttcc tgtttgcttt gttaattatt ttcgtcccca
121 gaggaaggcg tacctcctaa atggctctac tttgaacctg ctgggcaagg aagagatttt
181 caaggaaacc atctaccgtg tgcaagctcc tgccggccaa ccccagaccc cagcacggag
241 ccaggcgcct gtgcccgccg accctcagca tcctcctcag aaaggctggt ggcatcagga
301 agcccctggc cagcctccac ctgagcccag tgagctcagc tttaaggatg gagtcaggca
361 gggggtcctc aacccctcca ggacccattg ctgccctagg gatgccagac actgggcctg
421 gcagttcctc cctagggaag cttcaggcgc tccctgttgg gcccagagcc cactgtgggg
481 accctgtcag cctggctgca gcaggggacg gctctccaga cataggcccc acgggagagc
541 tgagtggtag cttaaagatc cccaaccggg acagcgggat cgacagtccc tcctccagtg
601 tggctggaga gaactttccc tgcgaggagg gcttggaggc tggcccaagc cccactgtac
661 tgggggcgca cgcagagatg gccctggaca gccaggtccc gaaggtcacc ccccaggagg
721 aggcggacag cgacgtgggt gaggaacctg actctgagaa caccccccag aaggctgaca
781 aggatgccgg cctggcccag cactctggcc cccagaagct tctccacatt gcccaggagc
841 tcctgcacac cgaggagacc tatgtgaagc ggctgcacct gctggaccag gttttctgca
901 ccaggctgac ggatgcgggg atccctccag aagtcatcat gggcatattc tctaacatct
961 cctccatcca ccgcttccac gggcagttcc tgctgccgga gctgaagacg cggatcacgg
1021 aggagtggga cacaaaccca cggctcgggg acatcctgca gaagctggcc ccattcctga
1081 agatgtacgg cgagtatgtc aagaactttg accgagccgt agggctggtg agcacgtgga
1141 cccagcgctc cccactgttt aaagacgtca tccacagcat ccagaagcag gaggtatgcg
1201 ggaacctgac gctgcagcac cacatgctgg agcccgtgca gagggtcccc cggtacgagc
1261 tgctgctcaa ggactatctg aagaggctcc cgcaggacgc cccagaccgg aaggatgcgg
1321 agaggtcctt ggagctcatc tccacagccg ccaaccactc caatgctgcc attcggaaag
1381 tggagaaaat gcacaagctc ttggaggtgt acgagcagct gggtggggaa gaagacattg
1441 tcaacccggc caatgaactg atcaaggagg gccaaatcca gaaactgtca gccaagaacg
1501 gcacccccca ggaccgccac ctcttcctgt tcaacagcat gatcctttac tgtgtgccca
1561 agctgcggct catgggccag aagttcagcg tccgggagaa gatggacatc tcaggcctcc
1621 aggtgcagga tatcgtcaag ccaaacacag cacatacatt catcataacg ggaagaaaaa
1681 ggtccctgga gctgcagacg cggacagagg aagagaagaa agaatggatt cagatcatcc
1741 aggccaccat cgagaagcac aaacagaaca gcgaaacctt caaggctttt ggtggcgcct
1801 tcagccagga tgaggacccc agcctctctc cagacatgcc tatcacgagc accagccctg
1861 tggagcctgt ggtgaccacc gaaggcagtt cgggtgcagc agggctcgag cccagaaaac
1921 tatcctctaa gaccagacgt gacaaggaga agcagagctg taagagctgt ggtgagacct
1981 tcaactccat caccaagagg aggcatcact gcaagctgtg tggggcggtc atctgtggga
2041 agtgctccga gttcaaggcc gagaacagcc ggcagagccg tgtctgcaga gattgtttcc
2101 tgacacagcc agtggcccct gagagcacag agaagacacc cactgcagac ccccagccca
2161 gcctgctctg cggccccctg cggctgtcag agagcggtga gacctggagc gaggtgtggg
2221 ccgccatccc catgtcagat ccccaggtgc tgcacctgca gggaggcagc caggacggcc
2281 ggctgccccg caccatccct ctccccagct gcaaactgag tgtgccggac cctgaggaga
2341 ggctggactc ggggcatgtg tggaagctgc agtgggccaa gcagtcctgg tacctgagcg
2401 cctcctccgc agagctgcag cagcagtggc tggaaaccct aagcactgct gcccatgggg
2461 acacggccca ggacagcccg ggggccctgc agcttcaggt ccctatgggc gcagctgctc
2521 cgtgagctga gtctcccact gccctgcaca ccaccacatt ggacctgtgc tgtcctggga
2581 ggtggtgttg gaggccccat gaagagcgcc ctggactgct gagggtgggc caacagccca
2641 gagctcagga cacttggctt tggggggaag gaaactgagg cccagagagg ggcaaccact
2701 ggccaagggt cacccagcaa gttttggcta agagcctggc ctccagcccc agcagtgtgg
2761 cccagagcag gggccgactg ccaaagtaac catcatccat atgggccgtg tggtgatgct
2821 ggcccggaag gcagaaagag gcagcatggg cactgccagg gacagccaca tcctgctggt
2881 ctgcagcgtg gtccaccccg cctctgccca gcctgtctac accgtgtgag ctgaatcgtg
2941 acttgcttcc cacctccttt ctctgtcctc tcctgaggtt ctgcctgcag cccccaggag
3001 gtgggcctgc cccatcctag ctggactcat ggttcctaaa taaccacgct cagaagctct
3061 gctaggactt accccagcca ctgagtggca ggcgcatgag atttgtggct gttcctgatg
3121 ctagtggcac acagtgctta tctgcataaa taaacactgg ccaccaaaaa aaaaaaaaaa
3181 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//