LOCUS BC032128 1399 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, mRNA (cDNA
clone MGC:29546 IMAGE:5017293), complete cds.
ACCESSION BC032128
VERSION BC032128.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1399)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1399)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC032128.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: m Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21040370.
FEATURES Location/Qualifiers
source 1..1399
/db_xref="H-InvDB:HIT000041435"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29546 IMAGE:5017293"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1399
/gene="DDX39"
/gene_synonym="BAT1"
/gene_synonym="DDXL"
/gene_synonym="MGC18203"
/gene_synonym="MGC8417"
/db_xref="GeneID:10212"
CDS 65..1033
/gene="DDX39"
/gene_synonym="BAT1"
/gene_synonym="DDXL"
/gene_synonym="MGC18203"
/gene_synonym="MGC8417"
/codon_start=1
/product="DDX39 protein"
/protein_id="AAH32128.1"
/db_xref="GeneID:10212"
/translation="MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSS
GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT
LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL
KKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP
HEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRK
LFDLLDVLEFNQPVTLSAVQGFPAADPGGHQSVWPGDGHRASQHRL"
misc_feature 152..928
/gene="DDX39"
/gene_synonym="BAT1"
/gene_synonym="DDXL"
/gene_synonym="MGC18203"
/gene_synonym="MGC8417"
/note="SrmB; Region: Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and
biogenesis]"
/db_xref="CDD:COG0513"
BASE COUNT 368 a 362 c 393 g 276 t
ORIGIN
1 ggcggaaaac cgaagttgga agtgtctctt agcagcgcgc ggagaagaac ggggagccag
61 catcatggca gaacaggatg tggaaaacga tcttttggat tacgatgaag aggaagagcc
121 ccaggctcct caagagagca caccagctcc ccctaagaaa gacatcaagg gatcctacgt
181 ttccatccac agctctggct tccgggactt tctgctgaag ccggagctcc tgcgggccat
241 cgtggactgt ggctttgagc atccttctga ggtccagcat gagtgcattc cccaggccat
301 cctgggcatg gacgtcctgt gccaggccaa gtccgggatg ggcaagacag cggtcttcgt
361 gctggccacc ctacagcaga ttgagcctgt caacggacag gtgacggtcc tggtcatgtg
421 ccacacgagg gagctggcct tccagatcag caaggaatat gagcgctttt ccaagtacat
481 gcccagcgtc aaggtgtctg tgttcttcgg tggtctctcc atcaagaagg atgaagaagt
541 gttgaagaag aactgtcccc atgtcgtggt ggggaccccg ggccgcatcc tggcgctcgt
601 gcggaatagg agcttcagcc taaagaatgt gaagcacttt gtgctggacg agtgtgacaa
661 gatgctggag cagctggaca tgcggcggga tgtgcaggag atcttccgcc tgacaccaca
721 cgagaagcag tgcatgatgt tcagcgccac cctgagcaag gacatccggc ctgtgtgcag
781 gaagttcatg caggatccca tggaggtgtt tgtggacgac gagaccaagc tcacgctgca
841 cggcctgcag cagtactacg tcaaactcaa agacagtgag aagaaccgca agctctttga
901 tctcttggat gtgctggagt ttaaccagcc tgtcacgcta tcagcagttc aaggatttcc
961 agcggcggat cctggtggcc accaatctgt ttggccgggg gatggacatc gagcgagtca
1021 acatcgtctt taactacgac atgcctgagg actcggacac ctacctgcac cgggtggccc
1081 gggcgggtcg ctttggcacc aaaggcctag ccatcacttt tgtgtctgac gagaatgatg
1141 ccaaaatcct caatgacgtc caggaccggt ttgaagttaa tgtggcagaa cttccagagg
1201 aaatcgacat ctccacatac atcgagcaga gccggtaacc accacgtgcc agagccgccc
1261 acccggagcc gcccgcatgc agcttcacct cccctttcca ggcgccactg ttgagaagct
1321 agagattgta tgagaataaa cttgttatta tggaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaa
//