LOCUS BC032128 1399 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, mRNA (cDNA clone MGC:29546 IMAGE:5017293), complete cds. ACCESSION BC032128 VERSION BC032128.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1399) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1399) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC032128.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 39 Row: m Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21040370. FEATURES Location/Qualifiers source 1..1399 /db_xref="H-InvDB:HIT000041435" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:29546 IMAGE:5017293" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1399 /gene="DDX39" /gene_synonym="BAT1" /gene_synonym="DDXL" /gene_synonym="MGC18203" /gene_synonym="MGC8417" /db_xref="GeneID:10212" CDS 65..1033 /gene="DDX39" /gene_synonym="BAT1" /gene_synonym="DDXL" /gene_synonym="MGC18203" /gene_synonym="MGC8417" /codon_start=1 /product="DDX39 protein" /protein_id="AAH32128.1" /db_xref="GeneID:10212" /translation="MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSS GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL KKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP HEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRK LFDLLDVLEFNQPVTLSAVQGFPAADPGGHQSVWPGDGHRASQHRL" misc_feature 152..928 /gene="DDX39" /gene_synonym="BAT1" /gene_synonym="DDXL" /gene_synonym="MGC18203" /gene_synonym="MGC8417" /note="SrmB; Region: Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]" /db_xref="CDD:COG0513" BASE COUNT 368 a 362 c 393 g 276 t ORIGIN 1 ggcggaaaac cgaagttgga agtgtctctt agcagcgcgc ggagaagaac ggggagccag 61 catcatggca gaacaggatg tggaaaacga tcttttggat tacgatgaag aggaagagcc 121 ccaggctcct caagagagca caccagctcc ccctaagaaa gacatcaagg gatcctacgt 181 ttccatccac agctctggct tccgggactt tctgctgaag ccggagctcc tgcgggccat 241 cgtggactgt ggctttgagc atccttctga ggtccagcat gagtgcattc cccaggccat 301 cctgggcatg gacgtcctgt gccaggccaa gtccgggatg ggcaagacag cggtcttcgt 361 gctggccacc ctacagcaga ttgagcctgt caacggacag gtgacggtcc tggtcatgtg 421 ccacacgagg gagctggcct tccagatcag caaggaatat gagcgctttt ccaagtacat 481 gcccagcgtc aaggtgtctg tgttcttcgg tggtctctcc atcaagaagg atgaagaagt 541 gttgaagaag aactgtcccc atgtcgtggt ggggaccccg ggccgcatcc tggcgctcgt 601 gcggaatagg agcttcagcc taaagaatgt gaagcacttt gtgctggacg agtgtgacaa 661 gatgctggag cagctggaca tgcggcggga tgtgcaggag atcttccgcc tgacaccaca 721 cgagaagcag tgcatgatgt tcagcgccac cctgagcaag gacatccggc ctgtgtgcag 781 gaagttcatg caggatccca tggaggtgtt tgtggacgac gagaccaagc tcacgctgca 841 cggcctgcag cagtactacg tcaaactcaa agacagtgag aagaaccgca agctctttga 901 tctcttggat gtgctggagt ttaaccagcc tgtcacgcta tcagcagttc aaggatttcc 961 agcggcggat cctggtggcc accaatctgt ttggccgggg gatggacatc gagcgagtca 1021 acatcgtctt taactacgac atgcctgagg actcggacac ctacctgcac cgggtggccc 1081 gggcgggtcg ctttggcacc aaaggcctag ccatcacttt tgtgtctgac gagaatgatg 1141 ccaaaatcct caatgacgtc caggaccggt ttgaagttaa tgtggcagaa cttccagagg 1201 aaatcgacat ctccacatac atcgagcaga gccggtaacc accacgtgcc agagccgccc 1261 acccggagcc gcccgcatgc agcttcacct cccctttcca ggcgccactg ttgagaagct 1321 agagattgta tgagaataaa cttgttatta tggaaaaaaa aaaaaaaaaa aaaaaaaaaa 1381 aaaaaaaaaa aaaaaaaaa //