LOCUS BC032109 3046 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens low density lipoprotein-related protein 12, mRNA (cDNA
clone MGC:22991 IMAGE:4842797), complete cds.
ACCESSION BC032109
VERSION BC032109.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3046)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3046)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC032109.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: n Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21264628.
FEATURES Location/Qualifiers
source 1..3046
/db_xref="H-InvDB:HIT000041422"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22991 IMAGE:4842797"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3046
/gene="LRP12"
/gene_synonym="FLJ12929"
/gene_synonym="ST7"
/db_xref="GeneID:29967"
/db_xref="HGNC:HGNC:31708"
CDS 4..2583
/gene="LRP12"
/gene_synonym="FLJ12929"
/gene_synonym="ST7"
/codon_start=1
/product="low density lipoprotein-related protein 12"
/protein_id="AAH32109.1"
/db_xref="GeneID:29967"
/db_xref="HGNC:HGNC:31708"
/translation="MACRWSTKESPRWRSALLLLFLAGVYGNGALAEHSENVHISGVS
TACGETPEQIRAPSGIITSPGWPSEYPAKINCSWFIRANPGEIITISFQDFDIQGSRR
CNLDWLTIETYKNIESYRACGSTIPPPYISSQDHIWIRFHSDDNISRKGFRLAYFSGK
SEEPNCACDQFRCGNGKCIPEAWKCNNMDECGDSSDEEICAKEANPPTAAAFQPCAYN
QFQCLSRFTKVYTCLPESLKCDGNIDCLDLGDEIDCDVPTCGQWLKYFYGTFNSPNYP
DFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTGYGDYVKIYDGLEENPHKLLRVLTA
FDSHAPLTVVSSSGQIRVHFCADKVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQ
QRCDGYWHCPNGRDETNCTMCQKEEFPCSRNGVCYPRSDRCNYQNHCPNGSDEKNCFF
CQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENCPVIVPTRVITAAVIGSLICGLLL
VIALGCTCKLYSLRMFERRSFETQLSRVEAELLRREAPPSYGQLIAQGLIPPVEDFPV
CSPNQASVLENLRLAVRSQLGFTSVRLPMAGRSSNIWNRIFNFARSRHSGSLALVSAD
GDEVVPSQSTSREPERNHTHRSLFSVESDDTDTENERRDMAGASGGVAAPLPQKVPPT
TAVEATVGACASSSTQSTRGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRWV
RFTLGRSSSLSQNQSPLRQLDNGVSGREDDDDVEMLIPISDGSSDFDVNDCSRPLLDL
ASDQGQGLRQPYNATNPGVRPSNRDGPCERCGIVHTAQIPDTCLEVTLKNETSDDEAL
LLC"
BASE COUNT 880 a 566 c 688 g 912 t
ORIGIN
1 gttatggcct gtcgctggag cacaaaagag tctccgcggt ggaggtctgc gttgctcttg
61 cttttcctcg ctggggtgta cggaaatggt gctcttgcag aacattctga aaatgtgcat
121 atttcaggag tgtcaactgc ttgtggagag actccagagc aaatacgagc accaagtggc
181 ataatcacaa gcccaggctg gccttctgaa tatcctgcaa aaatcaactg tagctggttc
241 ataagggcaa acccaggcga aatcattact ataagttttc aggattttga tattcaagga
301 tccagaaggt gcaatttgga ctggttgaca atagaaacat acaagaatat tgaaagttac
361 agagcttgtg gttccacaat tccacctccg tatatctctt cacaagacca catctggatt
421 aggtttcatt cggatgacaa catctctaga aagggtttca gactggcata tttttcaggg
481 aaatctgagg aaccaaattg tgcttgtgat cagtttcgtt gtggtaatgg aaagtgtata
541 ccagaagcct ggaaatgtaa taacatggat gaatgtggag atagttccga tgaagagatc
601 tgtgccaaag aagcaaatcc tccaactgct gctgcttttc aaccctgtgc ttacaaccag
661 ttccagtgtt tatcccgttt taccaaagtt tacacttgcc tccccgaatc tttaaaatgt
721 gatgggaaca ttgactgcct tgacctagga gatgagatag actgtgatgt gccaacatgt
781 gggcaatggc taaaatattt ttatggtact tttaattctc ccaattatcc agacttttat
841 cctcctggaa gcaattgcac ctggttaata gacactggtg atcaccgtaa agtcatttta
901 cgcttcactg actttaaact tgatggtact ggttatggtg attatgtcaa aatatatgat
961 ggattagagg agaatccaca caagcttttg cgtgtgttga cagcttttga ttctcatgca
1021 cctcttacag ttgtttcttc ttctggacag ataagggtac atttttgtgc tgataaagtg
1081 aatgctgcaa ggggatttaa tgctacttac caagtagatg ggttctgttt gccatgggaa
1141 ataccctgtg gaggtaactg ggggtgttat actgagcagc agcgttgtga tgggtattgg
1201 cattgcccaa atggaaggga tgaaaccaat tgtaccatgt gccagaagga agaatttcca
1261 tgttcccgaa atggtgtctg ttatcctcgt tctgatcgct gcaactacca gaatcattgc
1321 ccaaatggct cagatgaaaa aaactgcttt ttttgccaac caggaaattt ccattgtaaa
1381 aacaatcgtt gtgtgtttga aagttgggtg tgtgattctc aagatgactg tggtgatggc
1441 agcgatgaag aaaattgccc agtaatcgtg cctacaagag tcatcactgc tgccgtcata
1501 gggagcctca tctgtggcct gttactcgtc atagcattgg gatgtacttg taagctttat
1561 tctctgagaa tgtttgaaag aagatcattt gaaacacagt tgtcaagagt ggaagcagaa
1621 ttgttaagaa gagaagctcc tccctcgtat ggacaattga ttgctcaggg tttaattcca
1681 ccagttgaag attttcctgt ttgttcacct aatcaggctt ctgttttgga aaatctgagg
1741 ctagcggtac gatctcagct tggatttact tcagtcaggc ttcctatggc aggcagatca
1801 agcaacattt ggaaccgtat ttttaatttt gcaagatcac gtcattctgg gtcattggct
1861 ttggtctcag cagatggaga tgaggttgtc cctagtcaga gtaccagtag agaacctgag
1921 agaaatcata ctcacagaag tttgttttcc gtggagtctg atgatacaga cacagaaaat
1981 gagagaagag atatggcagg agcatctggt ggggttgcag ctcctttgcc tcaaaaagtc
2041 cctcccacaa cggcagtaga agcgacagta ggagcatgtg caagttcctc aactcagagt
2101 acccgaggtg gtcatgcaga taatggaagg gatgtgacaa gtgtggaacc cccaagtgtg
2161 agtccagcac gtcaccagct tacaagtgca ctcagtcgta tgactcaggg gctacgctgg
2221 gtacgtttta cattaggacg atcaagttcc ctaagtcaga accagagtcc tttgagacaa
2281 cttgataatg gggtaagtgg aagagaagat gatgatgatg ttgaaatgct aattccaatt
2341 tctgatggat cttcagactt tgatgtgaat gactgctcca gacctcttct tgatcttgcc
2401 tcagatcaag gacaagggct tagacaacca tataatgcaa caaatcctgg agtaaggcca
2461 agtaatcgag atggcccctg tgagcgctgt ggtattgtcc acactgccca gataccagac
2521 acttgcttag aagtaacact gaaaaacgaa acgagtgatg atgaggcttt gttactttgt
2581 taggtacgaa tcacataagg gagattgtat acaagttgga gcaatatcca tttattattt
2641 tgtaacttta cagttaaact agttttagtt taaaaagaaa aaatgcaggg tgatttctta
2701 ttattatatg ttagcctgca tggttaaatt cgacaacttg taactctatg aacttagagt
2761 ttactatttt agcagctaaa aatgcatcac atattcatat tgttcaataa tgtcctttca
2821 tttgtttctg attgttttca tcctgatact gtagttcact gtagaaatgt ggctgctgaa
2881 actcatttga ttgtcatttt tatctatcct atgttaaatg gtttgttttt acaaaataat
2941 accttatttt aattgaaacg tttatgcttt tgccaacaca tcttgtaact taatatacta
3001 gatgttaagg ttgttaatgt acaaaaaaaa aaaaaaaaaa aaaaaa
//