LOCUS BC031837 3270 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens protocadherin beta 10, mRNA (cDNA clone MGC:24979 IMAGE:4931995), complete cds. ACCESSION BC031837 VERSION BC031837.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3270) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3270) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 29 Row: n Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 52486036. FEATURES Location/Qualifiers source 1..3270 /db_xref="H-InvDB:HIT000041380" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:24979 IMAGE:4931995" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3270 /gene="PCDHB10" /gene_synonym="PCDH-BETA10" /gene_synonym="PCHB10" /db_xref="GeneID:56126" /db_xref="HGNC:HGNC:8681" /db_xref="MIM:606336" CDS 175..2577 /gene="PCDHB10" /gene_synonym="PCDH-BETA10" /gene_synonym="PCHB10" /codon_start=1 /product="protocadherin beta 10" /protein_id="AAH31837.1" /db_xref="GeneID:56126" /db_xref="HGNC:HGNC:8681" /db_xref="MIM:606336" /translation="MAVRELCFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSF VVNLAKDLGLAEGELAARGTRVVSDDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPC MLYFQILMDDPFQIYRAELRVRDINDHAPVFQDKETVLKISENTAEGTAFRLERAQDP DGGLNGIQNYTISPNSFFHINISGGDEGMIYPELVLDKALDREEQGELSLTLTALDGG SPSRSGTSTVRIVVLDVNDNAPQFAQALYETQAPENSPIGFLIVKVWAEDVDSGVNAE VSYSFFDASENIRTTFQINPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCRVL VEVLDTNDNPPELIVSSFSNSVAENSPETPLAVFKINDRDSGENGKMVCYIQENLPFL LKPSVENFYILITEGALDREIRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINA DNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVLVLDANDNSPFVLYPLQ NGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV RTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHLLLVDGFSQPYLPLPEAAPAQAQ AEADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVD VRGAETLSQSYQYEVCLTGGPGTSEFKFLKPVISDIQAQGPGRKGEENSTFRNSFGFN IQ" BASE COUNT 838 a 786 c 796 g 850 t ORIGIN 1 gaagacacgg acagatgaac ttaaaagaga agctttagct gccaaagatt gggaaaggga 61 aaggacaaaa aagacccctg ggctacacgg cgtaggtgca gggtttccta ctgctgttct 121 tttatgctgg gagctgtggc tgtaaccaac taggaaataa cgtatgcagc agctatggct 181 gtcagagagt tgtgcttccc aagacaaagg caagtcctgt ttctttttct tttttgggga 241 gtgtccttgg caggttctgg gtttggacgt tattcggtga ctgaggaaac agagaaagga 301 tcctttgtgg tcaatctggc aaaggatctg ggactagcag agggggagct ggctgcaagg 361 ggaaccaggg tggtttccga tgataacaaa caatacctgc tcctggattc acataccggg 421 aatttgctca caaatgagaa actggaccga gagaagctgt gtggccctaa agagccctgt 481 atgctgtatt tccaaatttt aatggatgat ccctttcaga tttaccgggc tgagctgaga 541 gtcagggata taaatgatca cgcgccagta tttcaggaca aagaaacagt cttaaaaata 601 tcagaaaata cagctgaagg gacagcattt agactagaaa gagcacagga tccagatgga 661 ggacttaacg gtatccaaaa ctacacgatc agccccaact cttttttcca tattaacatt 721 agtggcggtg atgaaggcat gatatatcca gagctagtgt tggacaaagc actggatcgg 781 gaggagcagg gagagctcag cttaaccctc acagcgctgg atggtgggtc tccatccagg 841 tctgggacct ctactgtacg catcgttgtc ttggacgtca atgacaatgc cccacagttt 901 gcccaggctc tgtatgagac ccaggctcca gaaaacagcc ccattgggtt ccttattgtt 961 aaggtatggg cagaagatgt agactctgga gtcaacgcgg aagtatccta ttcatttttt 1021 gatgcctcag aaaatattcg aacaaccttt caaatcaatc ctttttctgg ggaaatcttt 1081 ctcagagaat tgcttgatta tgagttagta aattcttaca aaataaatat acaggcaatg 1141 gacggtggag gcctttctgc aagatgtagg gttttagtgg aagtattgga caccaatgac 1201 aatccccctg aactgatcgt atcatcattt tccaactctg ttgctgagaa ttctcctgag 1261 acgccgctgg ctgtttttaa gattaatgac agagactctg gagaaaatgg aaagatggtt 1321 tgctacattc aagagaatct gccattccta ctaaaacctt ctgtggagaa tttttacatc 1381 ctaattacag aaggcgcgct ggacagagag atcagagccg agtacaacat cactatcacc 1441 gtcactgact tggggacacc caggctgaaa accgagcaca acataacggt cctggtctcc 1501 gacgtcaatg acaacgcccc cgccttcacc caaacctcct acaccctgtt cgtccgcgag 1561 aacaacagcc ccgccctgca catcggcagc gtcagcgcca cagacagaga ctcgggcacc 1621 aacgcccagg tcacctactc gctgctgccg ccccaagacc cgcacctgcc cctcgcctcc 1681 ctggtctcca tcaacgcgga caacggccac ctgttcgccc tcaggtcgct ggactacgag 1741 gccctgcagg ctttcgagtt ccgcgtgggc gccacagacc gcggctcccc cgcgctgagc 1801 agagaggcgc tggtgcgcgt gctggtgctg gacgccaacg acaactcgcc cttcgtgctg 1861 tacccgctgc agaacggctc cgcgccctgc accgagctgg tgccccgggc ggccgagccg 1921 ggctacctgg tgaccaaggt ggtggcggtg gacggcgact cgggccagaa cgcctggctg 1981 tcgtaccagc tgctcaaggc cacggagccc gggctgttcg gtgtgtgggc gcacaatggg 2041 gaggtgcgca ccgccaggct gctgagcgag cgcgacgcag ccaagcacag gctcgtggtg 2101 cttgtcaagg acaatggcga gcctcctcgc tcggccaccg ccacgctgca cttgctcctg 2161 gtggacggct tctcccagcc ctacctgcct ctcccggagg cggccccggc ccaggcccag 2221 gccgaggccg acttgctcac cgtctacctg gtggtggcgt tggcctcggt gtcttcgctc 2281 ttcctcctct cggtgctcct gttcgtggcg gtgcggctgt gcaggaggag cagggcggcc 2341 tcggtgggtc gctgctcggt gcccgagggt ccttttccag ggcatctggt ggacgtgagg 2401 ggcgctgaga ccctgtccca gagctaccag tatgaggtgt gtctgacggg aggccccggg 2461 accagtgagt tcaagttctt gaaaccagtt atttcggata ttcaggcaca gggccctggg 2521 aggaagggtg aagaaaattc caccttccga aatagctttg gatttaatat tcagtaaagt 2581 ctgtttttag tttcatatac ttttggtgtg ttacatagcc atgtttctat tagtttactt 2641 ttaaatctca aatttaagtt attatgcaac ttcaagcatt attttcaagt agtatacccc 2701 tgtggtttta caatgtttca tcattttttt gcattaataa caactgggtt taatttaatg 2761 agtatttttt tctaaatgat agtgttaagg ttttaattct ttccaactgc ccaaggaatt 2821 aattactatt atatctcatt acagaaatct gaggttttga ttcatttcag agcttgcatc 2881 tcatgattct aatcacttct gtctatagtg tacttgctct atttaagaag gcatatctac 2941 atttccaaac tcattctaac attctatata ttcgtgtttg aaaaccatgt catttatttc 3001 tacatcatgt atttaaaaag aaatatttct ctactactat gctcatgaca aaatgaaaca 3061 aagcatattg tgagcaatac tgaacatcaa taataccctt agtttatata cttattattt 3121 tatctttaag catgctactt ttacttggcc aatattttct tatgttaact tttgctgatg 3181 tataaaacag actatgcctt ataattgaaa taaaattata atctgcctga aaatgaataa 3241 aaataaaaca ttttgaaaaa aaaaaaaaaa //