LOCUS BC031612 1168 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 11 open reading frame 42, mRNA (cDNA clone
MGC:34805 IMAGE:5171107), complete cds.
ACCESSION BC031612
VERSION BC031612.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1168)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1168)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734960.
FEATURES Location/Qualifiers
source 1..1168
/db_xref="H-InvDB:HIT000041334"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34805 IMAGE:5171107"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1168
/gene="C11orf42"
/gene_synonym="MGC34805"
/db_xref="GeneID:160298"
/db_xref="HGNC:HGNC:28541"
CDS 49..1050
/gene="C11orf42"
/gene_synonym="MGC34805"
/codon_start=1
/product="chromosome 11 open reading frame 42"
/protein_id="AAH31612.1"
/db_xref="GeneID:160298"
/db_xref="HGNC:HGNC:28541"
/translation="MLVGTPNLLTLDEADATWTLIKDKVIEEHFGPNAVAVPFLSDAA
CYDLLGVLVKQSRPAHTRLALPGRQGRRALKPVGPLPSLLEQAGSEGAFAHCTREYSP
NGRAERAYEETRMLDGQPCKIRLHMGDLRKKVAFLLLPPGQVSLQQTLPWLRSTHSIY
VIYQVFSCSWLQLGLTSTAREPQLLRLLRSLPVAFSCLKFSLQSKGVLGPQKPLTKDP
LPHGANWVRPNLSIMPPLAPTSASADTTEAADVPPPVPAPPTPPPQEGPEDKPTRFSY
KGRNPFWRGPQILSENWLFSPRSPPPGAQGGGPRDPDGHSMSLPLLQGLSSEFDSDD"
BASE COUNT 273 a 388 c 292 g 215 t
ORIGIN
1 ggttcctgca gcagccactg ccctgcccaa tccctcccat accccaccat gttggtgggt
61 acccccaacc tgctgacact ggatgaagct gatgccacct ggaccctcat caaggataag
121 gtcatcgagg agcactttgg gcccaatgca gtagcagtac ctttcctgtc agatgcagcc
181 tgctatgacc tactgggtgt gctggtaaaa cagtcccgcc cagcccatac ccgcctggct
241 ttgccaggtc ggcagggccg gagggcactg aaaccagtgg ggccactacc aagcctcctg
301 gagcaggcag gatctgaggg tgccttcgcc cactgcactc gggaatactc accaaatggc
361 cgagcagaga gagcctatga agagacgcga atgttggatg gacagccctg caagatccgc
421 ctacatatgg gtgacctgcg caagaaggtt gccttcctgt tgctgccacc agggcaggtg
481 agcctacagc agactcttcc ctggctccga agcacccaca gcatctatgt catctaccag
541 gtcttctctt gttcctggct gcagctgggg ctgacgtcta cagcccgtga gccccagctc
601 ctccggctac ttcggtcatt acctgttgcc ttctcctgcc tcaagttttc actgcagtct
661 aagggcgtgc tgggaccaca gaagcctctc actaaagacc cattgcccca tggggccaac
721 tgggtcagac ccaacctcag catcatgccg cctctggccc ccacatcagc atctgctgat
781 acaactgaag ctgctgatgt gcccccacct gtcccagccc cacctacgcc acctccccag
841 gaagggccag aggacaaacc caccagattc tcctacaagg gccgaaaccc cttctggagg
901 gggccccaga tactgtcaga gaactggctc ttcagccccc gcagccctcc accaggagcc
961 cagggtgggg gccccaggga ccccgacggg cactccatgt ccctgcccct gctgcagggt
1021 ctatcctcag agttcgacag tgacgactga agctgaagca aaagattccg ggggcaaagc
1081 ccccaagatc tggcataggg gtactggtct ctaataaaca tcagctgctg ctcccccaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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