LOCUS BC031585 2292 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens coiled-coil domain containing 108, mRNA (cDNA clone
IMAGE:5180383), complete cds.
ACCESSION BC031585
VERSION BC031585.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2292)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2292)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748832
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2292
/db_xref="H-InvDB:HIT000041323"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5180383"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2292
/gene="CCDC108"
/gene_synonym="DKFZp434O0527"
/gene_synonym="MGC35338"
/db_xref="GeneID:255101"
/db_xref="HGNC:HGNC:25325"
CDS 128..619
/gene="CCDC108"
/gene_synonym="DKFZp434O0527"
/gene_synonym="MGC35338"
/codon_start=1
/product="coiled-coil domain containing 108"
/protein_id="AAH31585.1"
/db_xref="GeneID:255101"
/db_xref="HGNC:HGNC:25325"
/translation="MLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAM
SACSTISAQPASSMDTQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVL
KNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQKKPLTCHIKASECLKYM
QYE"
BASE COUNT 621 a 429 c 429 g 813 t
ORIGIN
1 gtcctgtatc tatggagacg gcaatatgga ggcgatctta catttctttg atttcatctg
61 aacgtccagt tcacagttgg agctccatac tcagagtgct ccctttggac tgtgtcccaa
121 ggacctgatg ctcacccagg ctccaagctc cgtcgtgagg tccaggaaca gcaggaacca
181 caccgtgaac tctggtggat cctgcctgag tgccagcaca gtggccatcc ctgccatcaa
241 cgacagcagt gcagccatga gtgcctgcag caccatcagc gcccagcccg caagctccat
301 ggacactcag atgcactccc caaagaagca ggagagagtg aacaagaggg tcatctgggg
361 cattgaggtg gctgaggagc tgcattggaa aggctgggag ctaggaaagg agaccacaag
421 gaatctggtt ctgaaaaatc gatccttgaa actccagaag atgaagtaca ggtaccagta
481 taagggatca aggacccagt gccacagcct tgagccccga aagcaggctc tcttcaaaac
541 aaaacaaaac aaacaaaaaa aacctttaac atgccatata aaagccagtg agtgtttaaa
601 atacatgcag tatgaataat tatgcagcta taatccatta tttttcattg tggtatagtg
661 tcccaatgtg tgcctgtacc ataatgtatt catccagaat gaaggaagtt tgggctgttt
721 ctatttggga ctgttggcat tcgtgtatat gtgtccagtt acataagtac aagagttttt
781 ctggggaata ccaggtacta tgaaggctca cgtgattttg gagtcttatg aaggtttttt
841 tttttttttt ttcctgcgta gttgttaaat tggtgacctt gcgggatgga accttctatt
901 ccaccacctt gctccacctt ctgtcttttc tggggaatag acgcaggagt agaattgcgg
961 aggcttgggc catgtacctg ttcacttgct gtagataaac caaactattt cccaaagtgc
1021 atggatttct ttagacaccc accagcagca ttagagagtt cccattcctc cacatcctta
1081 ccaataactg ctattgtcag aatttaaaat ttttgccagt aatggtaact tgtggcttta
1141 atttgcattt ccctgattac taatgaatga ggatgagtgt ctttttgtag gttattgaca
1201 ctttgcattt cttcatgtgt gaaatttatg atcaagtctg tggccatttt tctcttacat
1261 tatcttgtct tttttctttt tggtataagt tcttatccca attacaaact ctttgccagt
1321 tatgcgttgt ggatatcttc tctcatctta tgatttgtct ttactccctt tattgtgtct
1381 tttgaagaat aaaagttcaa agttgaattt taaaggtatc aactttatca gtctttttat
1441 tttatgattg gtgctttttt atgcttctcc taagaagtcc ttctctaccc ctaggtcatt
1501 aagatatttt cctctagtat cttctaaaga ctttatattt ttgcctttta tatttgtctt
1561 ttgtctatat ggaattgatt tttatgaata gtaagtcttg atagctggta gtatacgtcc
1621 tcctacttaa ttcttcttca agattgtctt ggctattctt ggccctccct ttgatctctt
1681 acataaatat tcaaatcagc ttatcataca tgcacataaa acacttcttg agattttgat
1741 tgggatttaa ttggacctat agatgaatat gaggagaaat gatatcatta taatattgag
1801 tcttttactc catgaacatg ggctatttct gtattcatta ggttatcttt cctgtctctc
1861 aatagagtgt aaagttttct ccatagacat ttagcacatc cttagttaga tttattcata
1921 agtattttat atttttgctg ttgttatata tgacatattt tttagttgtt ttatttctgt
1981 ttgttgctag tttttaaaat gtcattttta tataggtatt atgttcagtg atcttggcaa
2041 atcctcttat tctaataatt tatttgttaa ttttcttgtt ttttcatgca cacatttgta
2101 ttttaaatgg aaaatgacat ttttttttct ttctagtcct tacacctttg gctttcctta
2161 ctgcattgtt aaatagaaga gtgttgaaca gaagtggtta tagaggcatc tttgttttgt
2221 ttatcatctc agagtaaagg actgcaatgt ttcactatta aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aa
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