LOCUS       BC031554                2150 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens RAR-related orphan receptor C, mRNA (cDNA clone
            MGC:34470 IMAGE:5186655), complete cds.
ACCESSION   BC031554
VERSION     BC031554.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2150)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Life Technologies, Inc.
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 50 Row: g Column: 10
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 48255916.
FEATURES             Location/Qualifiers
     source          1..2150
                     /db_xref="H-InvDB:HIT000041307"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:34470 IMAGE:5186655"
                     /tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
                     /clone_lib="NIH_MGC_116"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..2150
                     /gene="RORC"
                     /gene_synonym="NR1F3"
                     /gene_synonym="RORG"
                     /gene_synonym="RZRG"
                     /gene_synonym="TOR"
                     /db_xref="GeneID:6097"
                     /db_xref="HGNC:HGNC:10260"
                     /db_xref="MIM:602943"
     CDS             27..1583
                     /gene="RORC"
                     /gene_synonym="NR1F3"
                     /gene_synonym="RORG"
                     /gene_synonym="RZRG"
                     /gene_synonym="TOR"
                     /codon_start=1
                     /product="RAR-related orphan receptor C"
                     /protein_id="AAH31554.1"
                     /db_xref="GeneID:6097"
                     /db_xref="HGNC:HGNC:10260"
                     /db_xref="MIM:602943"
                     /translation="MDRAPQRQHRASRELLAAKKTHTSQIEVIPCKICGDKSSGIHYG
                     VITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVK
                     FGRMSKKQRDSLHAEVQKQLQQRQQQQQEPVVKTPPAGAQGADTLTYTLGLPDGQLPL
                     GSSPDLPEASACPPGLLKASGSGPSYSNNLAKAGLNGASCHLEYSPERGKAEGRESFY
                     STGSQLTPDRCGLRFEEHRHPGLGELGQGPDSYGSPSFRSTPEAPYASLTEIEHLVQS
                     VCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEF
                     AKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALG
                     CSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAF
                     HHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFST
                     ETESPVGLSK"
BASE COUNT          529 a          632 c          582 g          407 t
ORIGIN      
        1 caggacggca ccaagggagc tgccccatgg acagggcccc acagagacag caccgagcct
       61 cacgggagct gctggctgca aagaagaccc acacctcaca aattgaagtg atcccttgca
      121 aaatctgtgg ggacaagtcg tctgggatcc actacggggt tatcacctgt gaggggtgca
      181 agggcttctt ccgccggagc cagcgctgta acgcggccta ctcctgcacc cgtcagcaga
      241 actgccccat cgaccgcacc agccgaaacc gatgccagca ctgccgcctg cagaaatgcc
      301 tggcgctggg catgtcccga gatgctgtca agttcggccg catgtccaag aagcagaggg
      361 acagcctgca tgcagaagtg cagaaacagc tgcagcagcg gcaacagcag caacaggaac
      421 cagtggtcaa gacccctcca gcaggggccc aaggagcaga taccctcacc tacaccttgg
      481 ggctcccaga cgggcagctg cccctgggct cctcgcctga cctgcctgag gcttctgcct
      541 gtccccctgg cctcctgaaa gcctcaggct ctgggccctc atattccaac aacttggcca
      601 aggcagggct caatggggcc tcatgccacc ttgaatacag ccctgagcgg ggcaaggctg
      661 agggcagaga gagcttctat agcacaggca gccagctgac ccctgaccga tgtggacttc
      721 gttttgagga acacaggcat cctgggcttg gggaactggg acagggccca gacagctacg
      781 gcagccccag tttccgcagc acaccggagg caccctatgc ctccctgaca gagatagagc
      841 acctggtgca gagcgtctgc aagtcctaca gggagacatg ccagctgcgg ctggaggacc
      901 tgctgcggca gcgctccaac atcttctccc gggaggaagt gactggctac cagaggaagt
      961 ccatgtggga gatgtgggaa cggtgtgccc accacctcac cgaggccatt cagtacgtgg
     1021 tggagttcgc caagaggctc tcaggcttta tggagctctg ccagaatgac cagattgtgc
     1081 ttctcaaagc aggagcaatg gaagtggtgc tggttaggat gtgccgggcc tacaatgctg
     1141 acaaccgcac ggtctttttt gaaggcaaat acggtggcat ggagctgttc cgagccttgg
     1201 gctgcagcga gctcatcagc tccatctttg acttctccca ctccctaagt gccttgcact
     1261 tttccgagga tgagattgcc ctctacacag cccttgttct catcaatgcc catcggccag
     1321 ggctccaaga gaaaaggaaa gtagaacagc tgcagtacaa tctggagctg gcctttcatc
     1381 atcatctctg caagactcat cgccaaagca tcctggcaaa gctgccaccc aaggggaagc
     1441 ttcggagcct gtgtagccag catgtggaaa ggctgcagat cttccagcac ctccacccca
     1501 tcgtggtcca agccgctttc cctccactct acaaggagct cttcagcact gaaaccgagt
     1561 cacctgtggg gctgtccaag tgacctggaa gagggactcc ttgcctctcc ctatggcctg
     1621 ctggcccacc tccctggacc ccgttccacc ctcacccttt tcctttccca tgaaccctgg
     1681 agggtggtcc ccaccagctc tttggaagtg agcagatgct gcggctggct ttctgtcagc
     1741 aggccggcct ggcagtggga caatcgccag agggtggggc tggcagaaca ccatctccag
     1801 cctcagcttt gacctgtctc atttcccata ttccttcaca cccagcttct ggaaggcatg
     1861 gggtggctgg gatttaagga cttctggggg accaagacat cctcaagaaa acaggggcat
     1921 ccagggctcc ctggatgaat agaatgcaat tcattcagaa gctcagaagc taagaataag
     1981 cctttgaaat acctcattgc atttcccttt gggcttcggc ttggggagat ggatcaagct
     2041 cagagactgg cagtgagagc ccataaggac ctgtataaaa tgaatctgga gctttaaaaa
     2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//