LOCUS BC031554 2150 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens RAR-related orphan receptor C, mRNA (cDNA clone MGC:34470 IMAGE:5186655), complete cds. ACCESSION BC031554 VERSION BC031554.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2150) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2150) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 50 Row: g Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48255916. FEATURES Location/Qualifiers source 1..2150 /db_xref="H-InvDB:HIT000041307" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34470 IMAGE:5186655" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2150 /gene="RORC" /gene_synonym="NR1F3" /gene_synonym="RORG" /gene_synonym="RZRG" /gene_synonym="TOR" /db_xref="GeneID:6097" /db_xref="HGNC:HGNC:10260" /db_xref="MIM:602943" CDS 27..1583 /gene="RORC" /gene_synonym="NR1F3" /gene_synonym="RORG" /gene_synonym="RZRG" /gene_synonym="TOR" /codon_start=1 /product="RAR-related orphan receptor C" /protein_id="AAH31554.1" /db_xref="GeneID:6097" /db_xref="HGNC:HGNC:10260" /db_xref="MIM:602943" /translation="MDRAPQRQHRASRELLAAKKTHTSQIEVIPCKICGDKSSGIHYG VITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVK FGRMSKKQRDSLHAEVQKQLQQRQQQQQEPVVKTPPAGAQGADTLTYTLGLPDGQLPL GSSPDLPEASACPPGLLKASGSGPSYSNNLAKAGLNGASCHLEYSPERGKAEGRESFY STGSQLTPDRCGLRFEEHRHPGLGELGQGPDSYGSPSFRSTPEAPYASLTEIEHLVQS VCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEF AKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALG CSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAF HHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFST ETESPVGLSK" BASE COUNT 529 a 632 c 582 g 407 t ORIGIN 1 caggacggca ccaagggagc tgccccatgg acagggcccc acagagacag caccgagcct 61 cacgggagct gctggctgca aagaagaccc acacctcaca aattgaagtg atcccttgca 121 aaatctgtgg ggacaagtcg tctgggatcc actacggggt tatcacctgt gaggggtgca 181 agggcttctt ccgccggagc cagcgctgta acgcggccta ctcctgcacc cgtcagcaga 241 actgccccat cgaccgcacc agccgaaacc gatgccagca ctgccgcctg cagaaatgcc 301 tggcgctggg catgtcccga gatgctgtca agttcggccg catgtccaag aagcagaggg 361 acagcctgca tgcagaagtg cagaaacagc tgcagcagcg gcaacagcag caacaggaac 421 cagtggtcaa gacccctcca gcaggggccc aaggagcaga taccctcacc tacaccttgg 481 ggctcccaga cgggcagctg cccctgggct cctcgcctga cctgcctgag gcttctgcct 541 gtccccctgg cctcctgaaa gcctcaggct ctgggccctc atattccaac aacttggcca 601 aggcagggct caatggggcc tcatgccacc ttgaatacag ccctgagcgg ggcaaggctg 661 agggcagaga gagcttctat agcacaggca gccagctgac ccctgaccga tgtggacttc 721 gttttgagga acacaggcat cctgggcttg gggaactggg acagggccca gacagctacg 781 gcagccccag tttccgcagc acaccggagg caccctatgc ctccctgaca gagatagagc 841 acctggtgca gagcgtctgc aagtcctaca gggagacatg ccagctgcgg ctggaggacc 901 tgctgcggca gcgctccaac atcttctccc gggaggaagt gactggctac cagaggaagt 961 ccatgtggga gatgtgggaa cggtgtgccc accacctcac cgaggccatt cagtacgtgg 1021 tggagttcgc caagaggctc tcaggcttta tggagctctg ccagaatgac cagattgtgc 1081 ttctcaaagc aggagcaatg gaagtggtgc tggttaggat gtgccgggcc tacaatgctg 1141 acaaccgcac ggtctttttt gaaggcaaat acggtggcat ggagctgttc cgagccttgg 1201 gctgcagcga gctcatcagc tccatctttg acttctccca ctccctaagt gccttgcact 1261 tttccgagga tgagattgcc ctctacacag cccttgttct catcaatgcc catcggccag 1321 ggctccaaga gaaaaggaaa gtagaacagc tgcagtacaa tctggagctg gcctttcatc 1381 atcatctctg caagactcat cgccaaagca tcctggcaaa gctgccaccc aaggggaagc 1441 ttcggagcct gtgtagccag catgtggaaa ggctgcagat cttccagcac ctccacccca 1501 tcgtggtcca agccgctttc cctccactct acaaggagct cttcagcact gaaaccgagt 1561 cacctgtggg gctgtccaag tgacctggaa gagggactcc ttgcctctcc ctatggcctg 1621 ctggcccacc tccctggacc ccgttccacc ctcacccttt tcctttccca tgaaccctgg 1681 agggtggtcc ccaccagctc tttggaagtg agcagatgct gcggctggct ttctgtcagc 1741 aggccggcct ggcagtggga caatcgccag agggtggggc tggcagaaca ccatctccag 1801 cctcagcttt gacctgtctc atttcccata ttccttcaca cccagcttct ggaaggcatg 1861 gggtggctgg gatttaagga cttctggggg accaagacat cctcaagaaa acaggggcat 1921 ccagggctcc ctggatgaat agaatgcaat tcattcagaa gctcagaagc taagaataag 1981 cctttgaaat acctcattgc atttcccttt gggcttcggc ttggggagat ggatcaagct 2041 cagagactgg cagtgagagc ccataaggac ctgtataaaa tgaatctgga gctttaaaaa 2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //