LOCUS BC031551 1486 bp mRNA linear HUM 30-MAR-2005 DEFINITION Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone MGC:34756 IMAGE:5179679), complete cds. ACCESSION BC031551 VERSION BC031551.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1486) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1486) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 50 Row: a Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, GenomeScan gene prediction. FEATURES Location/Qualifiers source 1..1486 /db_xref="H-InvDB:HIT000041306" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34756 IMAGE:5179679" /tissue_type="Brain, Lung, Testis, adult, pooled whole" /clone_lib="NIH_MGC_115" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1486 /gene="TRA@" /gene_synonym="TCRA" /gene_synonym="TCRD" /gene_synonym="TRA" /gene_synonym="TRDD3" /db_xref="GeneID:6955" /db_xref="MIM:186880" CDS 110..910 /gene="TRA@" /gene_synonym="TCRA" /gene_synonym="TCRD" /gene_synonym="TRA" /gene_synonym="TRDD3" /codon_start=1 /product="TRA@ protein" /protein_id="AAH31551.1" /db_xref="GeneID:6955" /db_xref="MIM:186880" /translation="MVLKFSVSILWIQLAWVSTQLLEQSPQFLSIQEGENLTVYCNSS SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT GLWSNFGNEKLTFGTGTRLTIIPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVS QSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPES SCDVKLVEKSFETDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSS" BASE COUNT 385 a 382 c 341 g 378 t ORIGIN 1 gtgggtggca gcaagcactc ttctagccca gagaagtctg ttccaggacg ggctctttca 61 ggagcagcta aagtcagggg ccatgtccac catgtgatag aaagacaaga tggtcctgaa 121 attctccgtg tccattcttt ggattcagtt ggcatgggtg agcacccagc tgctggagca 181 gagccctcag tttctaagca tccaagaggg agaaaatctc actgtgtact gcaactcctc 241 aagtgttttt tccagcttac aatggtacag acaggagcct ggggaaggtc ctgtcctcct 301 ggtgacagta gttacgggtg gagaagtgaa gaagctgaag agactaacct ttcagtttgg 361 tgatgcaaga aaggacagtt ctctccacat cactgcggcc cagcctggtg atacaggcct 421 ctggtctaac tttggaaatg agaaattaac ctttgggact ggaacaagac tcaccatcat 481 acccaatatc cagaaccctg accctgccgt gtaccagctg agagactcta aatccagtga 541 caagtctgtc tgcctattca ccgattttga ttctcaaaca aatgtgtcac aaagtaagga 601 ttctgatgtg tatatcacag acaaaactgt gctagacatg aggtctatgg acttcaagag 661 caacagtgct gtggcctgga gcaacaaatc tgactttgca tgtgcaaacg ccttcaacaa 721 cagcattatt ccagaagaca ccttcttccc cagcccagaa agttcctgtg atgtcaagct 781 ggtcgagaaa agctttgaaa cagatacgaa cctaaacttt caaaacctgt cagtgattgg 841 gttccgaatc ctcctcctga aagtggccgg gtttaatctg ctcatgacgc tgcggctgtg 901 gtccagctga gatctgcaag attgtaagac agcctgtgct ccctcgctcc ttcctctgca 961 ttgcccctct tctccctctc caaacagagg gaactctccc acccccaagg aggtgaaagc 1021 tgctaccacc tctgtgcccc cccggcaatg ccaccaactg gatcctaccc gaatttatga 1081 ttaagattgc tgaagagctg ccaaacactg ctgccacccc ctctgttccc ttattgctgc 1141 ttgtcactgc ctgacattca cggcagaggc aaggctgctg cagcctcccc tggctgtgca 1201 cattccctcc tgctccccag agactgcctc cgccatccca cagatgatgg atcttcagtg 1261 ggttctcttg ggctctaggt cctgcagaat gttgtgaggg gtttattttt tttttaatag 1321 tgttcataaa gaaatacata gtattcttct tctcaagacg tggggggaaa ttatctcatt 1381 atcgaggccc tgctatgctg tgtatctggg cgtgttgtat gtcctgctgc cgatgccttc 1441 attaaaatga tttggaagag caaaaaaaaa aaaaaaaaaa aaaaaa //