LOCUS BC031551 1486 bp mRNA linear HUM 30-MAR-2005
DEFINITION Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone
MGC:34756 IMAGE:5179679), complete cds.
ACCESSION BC031551
VERSION BC031551.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1486)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1486)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: a Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1486
/db_xref="H-InvDB:HIT000041306"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34756 IMAGE:5179679"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1486
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TCRD"
/gene_synonym="TRA"
/gene_synonym="TRDD3"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
CDS 110..910
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TCRD"
/gene_synonym="TRA"
/gene_synonym="TRDD3"
/codon_start=1
/product="TRA@ protein"
/protein_id="AAH31551.1"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
/translation="MVLKFSVSILWIQLAWVSTQLLEQSPQFLSIQEGENLTVYCNSS
SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT
GLWSNFGNEKLTFGTGTRLTIIPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVS
QSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPES
SCDVKLVEKSFETDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSS"
BASE COUNT 385 a 382 c 341 g 378 t
ORIGIN
1 gtgggtggca gcaagcactc ttctagccca gagaagtctg ttccaggacg ggctctttca
61 ggagcagcta aagtcagggg ccatgtccac catgtgatag aaagacaaga tggtcctgaa
121 attctccgtg tccattcttt ggattcagtt ggcatgggtg agcacccagc tgctggagca
181 gagccctcag tttctaagca tccaagaggg agaaaatctc actgtgtact gcaactcctc
241 aagtgttttt tccagcttac aatggtacag acaggagcct ggggaaggtc ctgtcctcct
301 ggtgacagta gttacgggtg gagaagtgaa gaagctgaag agactaacct ttcagtttgg
361 tgatgcaaga aaggacagtt ctctccacat cactgcggcc cagcctggtg atacaggcct
421 ctggtctaac tttggaaatg agaaattaac ctttgggact ggaacaagac tcaccatcat
481 acccaatatc cagaaccctg accctgccgt gtaccagctg agagactcta aatccagtga
541 caagtctgtc tgcctattca ccgattttga ttctcaaaca aatgtgtcac aaagtaagga
601 ttctgatgtg tatatcacag acaaaactgt gctagacatg aggtctatgg acttcaagag
661 caacagtgct gtggcctgga gcaacaaatc tgactttgca tgtgcaaacg ccttcaacaa
721 cagcattatt ccagaagaca ccttcttccc cagcccagaa agttcctgtg atgtcaagct
781 ggtcgagaaa agctttgaaa cagatacgaa cctaaacttt caaaacctgt cagtgattgg
841 gttccgaatc ctcctcctga aagtggccgg gtttaatctg ctcatgacgc tgcggctgtg
901 gtccagctga gatctgcaag attgtaagac agcctgtgct ccctcgctcc ttcctctgca
961 ttgcccctct tctccctctc caaacagagg gaactctccc acccccaagg aggtgaaagc
1021 tgctaccacc tctgtgcccc cccggcaatg ccaccaactg gatcctaccc gaatttatga
1081 ttaagattgc tgaagagctg ccaaacactg ctgccacccc ctctgttccc ttattgctgc
1141 ttgtcactgc ctgacattca cggcagaggc aaggctgctg cagcctcccc tggctgtgca
1201 cattccctcc tgctccccag agactgcctc cgccatccca cagatgatgg atcttcagtg
1261 ggttctcttg ggctctaggt cctgcagaat gttgtgaggg gtttattttt tttttaatag
1321 tgttcataaa gaaatacata gtattcttct tctcaagacg tggggggaaa ttatctcatt
1381 atcgaggccc tgctatgctg tgtatctggg cgtgttgtat gtcctgctgc cgatgccttc
1441 attaaaatga tttggaagag caaaaaaaaa aaaaaaaaaa aaaaaa
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