LOCUS BC031301 2693 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 47, mRNA (cDNA clone
MGC:39317 IMAGE:4330114), complete cds.
ACCESSION BC031301
VERSION BC031301.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2693)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2693)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24308206.
FEATURES Location/Qualifiers
source 1..2693
/db_xref="H-InvDB:HIT000041276"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39317 IMAGE:4330114"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2693
/gene="LRRC47"
/gene_synonym="KIAA1185"
/gene_synonym="RP1-286D6.3"
/db_xref="GeneID:57470"
/db_xref="HGNC:HGNC:29207"
CDS 29..1780
/gene="LRRC47"
/gene_synonym="KIAA1185"
/gene_synonym="RP1-286D6.3"
/codon_start=1
/product="leucine rich repeat containing 47"
/protein_id="AAH31301.1"
/db_xref="GeneID:57470"
/db_xref="HGNC:HGNC:29207"
/translation="MAAAAVSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPP
RLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALR
VLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNL
TGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIP
AELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSILEYLRVGGRGGGKGKGRAEGSE
KEESRRKRRERKQRREGGDGEEQDVGDAGRLLLRVLHVSENPVPLTVRVSPEVRDVRP
YIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVKGPLLYCAR
PPQDLKIVPLGRKEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYPC
LVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKMAEMKK
YTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVRVVDLEGSLKVVY
PSKADLATAPPHVTVVR"
BASE COUNT 581 a 726 c 825 g 561 t
ORIGIN
1 gtgggtgcct gccagcagct gaggcgccat ggcggcggca gcggtgtcag agtcttggcc
61 ggagctggag ctggctgagc gcgagcggcg gcgggagctg ctgctgacgg ggcccgggct
121 ggaggagcga gtgcgggcgg cgggtgggca gctgccgccg cggcttttca ccctgccgct
181 gctgcactac ttggaagtga gcggctgcgg gagcttgcgc gcgccggggc ctggcctggc
241 gcagggcctg ccgcagctgc acagcctcgt gctgcggcgc aacgcgctgg ggcccggcct
301 gagccccgag ctcgggccgc tgcctgccct tcgggtgctc gacctgtcgg gcaacgcgct
361 ggaggcgctg ccgccgggcc aaggcctggg ccccgccgag ccgccgggcc ttccgcagct
421 gcagagcctc aacctcagcg gcaaccggct gcgcgagctg ccagccgacc tggcgcgctg
481 cgccccgcgc ctgcagagcc tcaacctcac cggcaattgc ctagactcct ttcccgccga
541 gctctttcgc cccggcgcgc tgcccctgct cagtgaactg gcggctgctg acaactgcct
601 ccgagaactc agccccgaca tcgcccacct ggcctcgctc aagacgttgg acctctcgaa
661 caaccagctg agcgagatcc ctgcagagct tgcggactgc cccaagctca aggagatcaa
721 tttccgtggg aacaagctga gggacaagcg cctggagaag atggtcagcg gctgccagac
781 cagatccatc ctggagtacc tgcgcgtcgg aggccgtggt ggcgggaagg gcaagggccg
841 tgccgagggc tcggagaagg aagagagccg gaggaagagg agggagagga agcagaggcg
901 ggaaggtggt gatggggagg agcaggacgt gggagatgcc ggccggctgc tgctcagggt
961 cctgcacgtc tctgaaaacc ccgtacctct gacagtcaga gtgagccccg aggtccggga
1021 tgtgcggccc tacattgtgg gggccgtggt gcgaggcatg gacctgcagc cagggaatgc
1081 actcaagcgc ttcctcacct cgcagaccaa gctccacgaa gatctctgtg agaagaggac
1141 ggctgccacc cttgccaccc acgagctccg tgccgtcaaa gggcccctgc tgtactgcgc
1201 ccggccccca caggacctca agattgtccc cttggggcgg aaagaagcca aggccaagga
1261 gctggtgcgg cagctgcagc tggaggccga ggagcagagg aagcagaaga agcggcagag
1321 tgtgtcgggc ctgcacagat accttcactt gctggatgga aatgaaaatt acccgtgtct
1381 tgtggatgca gacggtgatg tgatttcctt cccaccaata accaacagtg agaagacaaa
1441 ggttaagaaa acgacttctg atttgttttt ggaagtaaca agtgccacca gtctgcagat
1501 ttgcaaggat gtcatggatg ccctcattct gaaaatggca gaaatgaaaa agtacacttt
1561 agaaaataaa gaggaaggat cactctcaga tactgaagcc gatgcagtct ctggacaact
1621 tccagatccc acaacgaatc ccagtgctgg aaaggacggg ccctcccttc tggtggtgga
1681 gcaggtccgg gtggtggatc tggaagggag cctgaaggtg gtgtacccgt ccaaggccga
1741 cctggccact gcccctcccc acgtgactgt cgtgcgctga cgccagggcc gcctgtccgc
1801 gtttgtttgg ccggttttgc ggaggtttct atgcggcaat gctgaattat ccgttagatt
1861 ttcaccccag tttttttgtt ggtttttttt ttgagatgga gtctcgctct gtcgccaggc
1921 tggagtgcag tggcgtgatc tcgagtcact gcagcctgtg tctcctgggt tcaagcgatt
1981 ctcctgcctc agcctcccaa gtagctggga ctacaggtgt gtgccactaa gctcagctaa
2041 tttttgtatt tttagtagag acggggtttc accattttga ccaggatggt cttgatctct
2101 tgacctcatg atctgtccac ctctgcccct caaagtgctg ggattacgtg atccacccgc
2161 ctcagcctcc caaagtgctg ggattacagg cgtgagctgt gcctggccca ccccagcatt
2221 ttttaagatg tatgtattcg ttgttctgtt tttccagatg attctgtcgt aaagtgatgc
2281 tatgttgtcg ttaaaacatc aaagtgattt tacggttttt gatgggatta ttcaagtgtc
2341 agaattaact gttcaaaatg ttctgaatca tgtagataca tggcaggtaa ctgtttatgg
2401 gagaaaagta cagtgctgtt acgtggcact gtacagtcat gtgccacgta acagcgtctg
2461 ggtcagtgac ggacacttac ctgacagcgg atccacaata ttctcgtgca gtgtgtttgg
2521 aatcctggtc tgggctctcg tcgttggcct tgtagatcaa gtaggggaag tgagtgatgt
2581 tcagtcatgc tgctgggaca cttggttttc cagatgaaaa cacataaata aaactacatg
2641 caccatcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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