LOCUS BC031091 2795 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens GATA zinc finger domain containing 1, mRNA (cDNA clone
MGC:33873 IMAGE:5275963), complete cds.
ACCESSION BC031091
VERSION BC031091.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2795)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2795)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: g Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2795
/db_xref="H-InvDB:HIT000041244"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33873 IMAGE:5275963"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2795
/gene="GATAD1"
/gene_synonym="FLJ22489"
/gene_synonym="ODAG"
/gene_synonym="RG083M05.2"
/db_xref="GeneID:57798"
/db_xref="HGNC:HGNC:29941"
CDS 157..966
/gene="GATAD1"
/gene_synonym="FLJ22489"
/gene_synonym="ODAG"
/gene_synonym="RG083M05.2"
/codon_start=1
/product="GATAD1 protein"
/protein_id="AAH31091.1"
/db_xref="GeneID:57798"
/db_xref="HGNC:HGNC:29941"
/translation="MPLGLKPTCSVCKTTSSSMWKKGAQGEILCHHCTGRGGAGSGGA
GSGAAGGTGSSGGGGFGAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKS
APAAEKKVSTKGKGRRHIFKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDE
QDGKPYYAQIRGFIQDQYCEKSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEY
LEFVCHAPSEYFKSRSSPFPTVPTRPEKGYIWTHVGPTPAITIKESVANHL"
BASE COUNT 815 a 615 c 645 g 720 t
ORIGIN
1 agcgtcagcg gcctggtcct ttcaccggca gctccgtgcc gacgctctca ccgctcttcc
61 tatcgccggg agtggcgggc cgaccagggg gcggccgggc taccgtccgc cattctcgtg
121 tctctgcgcc cgcgggggcc gcccgagccg gccaccatgc cgctgggcct gaagcccacc
181 tgcagcgtat gcaagaccac gtcgtcctcc atgtggaaga agggagcgca gggggagatc
241 ctctgccatc attgcactgg ccggggcggc gcgggcagcg ggggcgcagg ctcgggggcg
301 gctggaggga ctgggagcag cggcggcggc ggcttcggcg cggcgacctt cgccagcacc
361 tccgccaccc ctccgcagag caacgggggc gggggcggca agcagagtaa gcaggaaatt
421 cacaggaggt ctgctcggct cagaaacact aaatacaaat ctgctccggc tgctgaaaag
481 aaagtctcca ccaaaggaaa agggagaaga catatattta aattgaaaaa tcccatcaaa
541 gctcctgagt cagtttccac tataatcact gcagaatcaa tcttctacaa gggagtatat
601 taccaaattg gtgatgttgt ttctgtgatt gatgaacaag atggaaagcc ctactatgct
661 caaatcagag gttttatcca ggaccagtat tgcgagaaga gtgcagcact gacgtggctc
721 attcctaccc tctctagccc cagagaccaa tttgatcccg cctcctatat catagggcca
781 gaggaagatc ttccaaggaa gatggaatac ttggaatttg tttgtcatgc accttctgag
841 tatttcaagt cacggtcatc accatttccc acagttccca ccagaccaga gaagggctac
901 atatggactc atgttgggcc tactcctgca ataacaatta aggaatcagt tgccaaccat
961 ttgtagttca caaattaaaa ctgggtttcc aggcctggtg tggtggctca cgcctgtagc
1021 cccagctatt gcaccactgc tctccaagct gggcaatgga gtcagattct ctttcttaaa
1081 aaaccacaaa aaaactggat ttccagttct ctaatattct tagtaccaca agatatgtca
1141 taggtatctt taaatgaaat tcttagctgg aaaagtgact aaaaagtttt tctcctgcta
1201 cctagtaata aacaaatcat tgtttattac tggtcactta gaaaattaaa agggataggg
1261 ccaggcacag tggcttatgc ctgtaattgc agcactttta gaggctgagg caggagaatt
1321 ggttgaaccc aggaggcgga ggttgcagtg agcagagatc gtgccactgc actccagcct
1381 gggtggacag agcaagactc cgtctcaaag aaacaaacaa aaaattaaaa gggatagaat
1441 ataatgaaat atattttgaa cttaaattat attctatatg tgtatcttcc taggcaaaag
1501 ctgtaatttc cagagagacc attaggaaca ggtagtatct atttttctcc attatttatt
1561 tctagaaact cataaaatgg attgtatttt tctataagaa caaaatatta attaaggtat
1621 agatgactga ccgagggctt aatcaaataa aatgactaac agcatctatc ataaagccac
1681 acaagcctta tgttctcatc tcaaaaatgc tgtgacagct ttttggctgc tttaaccata
1741 agaaaaatga ttggtggatg gttttattag cccaggcttt taaaaacttt catctaggcc
1801 acgtgcggtg gctcatgcct gtaatcccgg cactttggga ggcctgagtg gatggatcac
1861 ttgaggtcag gagttcagga ccagcctggc caacatgatg aaaccctgtc tctactaaat
1921 atacaaaaat tagttgggtg ttacggtgca tgcctgtaat cccagctact cgggaggctg
1981 aggcaggaga attgcttgaa ctcgggaggt ggagattgca gtaagccgag atcgtgccac
2041 tgcactccag cctgggtgat agagcaagac tgtctcaaaa aaagaaaaaa aagaaaaaat
2101 tttaatttaa tccttctgta gcaaacaggc attcagaacc attccattga tcttaataaa
2161 gctgctcttt actgtttcta gtcaaaaatg agacttcgat caaaccataa gattttatac
2221 tgcagatagt cagcttcacc aaagccgcag aggaaacatg tcgagatcag gcttcctgct
2281 tgatagtctc ttgactacca ttaaaacgaa tattgggagg tcatgaaagt cattggtagg
2341 ccattagcat tgatatcttt aaaacatcta ccctaaacca tctgctatgg acccataata
2401 agaggcctgt tgtatatgaa attgtctaga attcaggtgc aggtctttgc cggttaagta
2461 agggagcaac acgtaaaatg ggagaggagt ggggtgtact cacttgcctc ctcttttgtc
2521 ctgatttaac cagcattttt caaccctggg aaaatttgca gaatctaagt tgattgtaat
2581 gattttgagc tgcagcagct ttaactctta ccctttttcc acatagttat ggtgtttgag
2641 ttggaaagaa acaactatag gtagctacac gtacataatt atctctttat tcacaaaggg
2701 tatagtaaaa ttgattgtaa ataactttct aagtgccaat attcaaaact tttggattaa
2761 aatgtatttt tcaccgtgca aaaaaaaaaa aaaaa
//