LOCUS BC031052 2594 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens TNF receptor-associated factor 6, mRNA (cDNA clone
MGC:33100 IMAGE:5272008), complete cds.
ACCESSION BC031052
VERSION BC031052.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2594)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2594)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22027628.
FEATURES Location/Qualifiers
source 1..2594
/db_xref="H-InvDB:HIT000041221"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33100 IMAGE:5272008"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2594
/gene="TRAF6"
/gene_synonym="MGC:3310"
/gene_synonym="RNF85"
/db_xref="GeneID:7189"
/db_xref="HGNC:HGNC:12036"
/db_xref="MIM:602355"
CDS 327..1895
/gene="TRAF6"
/gene_synonym="MGC:3310"
/gene_synonym="RNF85"
/codon_start=1
/product="TNF receptor-associated factor 6"
/protein_id="AAH31052.1"
/db_xref="GeneID:7189"
/db_xref="HGNC:HGNC:12036"
/db_xref="MIM:602355"
/translation="MSLLNCENSCGFSQSESDCCVAMASSCSAVTKDDSVGGTASTGN
LSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG
HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALM
DCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYC
NTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQA
VHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTI
RTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMR
LHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIM
DAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSL
RREGFQPRSTDAGV"
BASE COUNT 746 a 563 c 578 g 707 t
ORIGIN
1 gggcagtggc gtccgcagct ggggcttggc ctgcgggcgg ccagcgaagg tggcgaaggc
61 tcccactgga tccagagttt gccgtccaag cagcctcgtc tcggcgcgca gtgtctgtgt
121 ccgtcctcta ccggcgcctt ggctgagcgg agtcgtgcgg ttggtggggg agccctgccc
181 tcctggttcg gcctccccgc gcactagaac gatcatgaac ttctgaaggg acccagcttt
241 ctttgtgtgc tccaagtgat ttgcacaaat aataatatat atatttattg aaggagagaa
301 tcagagcaag tgataatcaa gttactatga gtctgctaaa ctgtgaaaac agctgtggat
361 tcagccagtc tgaaagtgac tgctgtgtgg ccatggccag ctcctgtagc gctgtaacaa
421 aagatgatag tgtgggtgga actgccagca cggggaacct ctccagctca tttatggagg
481 agatccaggg atatgatgta gagtttgacc cacccctgga aagcaagtat gaatgcccca
541 tctgcttgat ggcattacga gaagcagtgc aaacgccatg cggccatagg ttctgcaaag
601 cctgcatcat aaaatcaata agggatgcag gtcacaaatg tccagttgac aatgaaatac
661 tgctggaaaa tcaactattt ccagacaatt ttgcaaaacg tgagattctt tctctgatgg
721 tgaaatgtcc aaatgaaggt tgtttgcaca agatggaact gagacatctt gaggatcatc
781 aagcacattg tgagtttgct cttatggatt gtccccaatg ccagcgtccc ttccaaaaat
841 tccatattaa tattcacatt ctgaaggatt gtccaaggag acaggtttct tgtgacaact
901 gtgctgcatc aatggcattt gaagataaag agatccatga ccagaactgt cctttggcaa
961 atgtcatctg tgaatactgc aatactatac tcatcagaga acagatgcct aatcattatg
1021 atctagactg ccctacagcc ccaattccat gcacattcag tacttttggt tgccatgaaa
1081 agatgcagag gaatcacttg gcacgccacc tacaagagaa cacccagtca cacatgagaa
1141 tgttggccca ggctgttcat agtttgagcg ttatacccga ctctgggtat atctcagagg
1201 tccggaattt ccaggaaact attcaccagt tagagggtcg ccttgtaaga caagaccatc
1261 aaatccggga gctgactgct aaaatggaaa ctcagagtat gtatgtaagt gagctcaaac
1321 gaaccattcg aacccttgag gacaaagttg ctgaaatcga agcacagcag tgcaatggaa
1381 tttatatttg gaagattggc aactttggaa tgcatttgaa atgtcaagaa gaggagaaac
1441 ctgttgtgat tcatagccct ggattctaca ctggcaaacc cgggtacaaa ctgtgcatgc
1501 gcttgcacct tcagttaccg actgctcagc gctgtgcaaa ctatatatcc ctttttgtcc
1561 acacaatgca aggagaatat gacagccacc tcccttggcc cttccagggt acaatacgcc
1621 ttacaattct tgatcagtct gaagcacctg taaggcaaaa ccacgaagag ataatggatg
1681 ccaaaccaga gctgcttgct ttccagcgac ccacaatccc acggaaccca aaaggttttg
1741 gctatgtaac ttttatgcat ctggaagccc taagacaaag aactttcatt aaggatgaca
1801 cattattagt gcgctgtgag gtctccaccc gctttgacat gggtagcctt cggagggagg
1861 gttttcagcc acgaagtact gatgcagggg tatagcttgc cctcacttgc tcaaaaacaa
1921 ctacctggag aaaacagtgc ctttccttgc cctgttctca ataacatgca aacaaacaag
1981 ccacgggaaa tatgtaatat ctactagtga gtgttgttag agaggtcact tactatttct
2041 tcctgttaca aatgatctga ggcagttttt tcctgggaat ccacacgttc catgcttttt
2101 cagaaatgtt aggcctgaag tgcctgtggc atgttgcagc agctattttg ccagttagta
2161 tacctctttg ttgtactttc ttgggctttt gctctggtgt attttattgt cagaaagtcc
2221 agactcaaga gtactaaact tttaataata atggattttc cttaaaactt cagtcttttt
2281 gtagtattat atgtaatata ttaaaagtga aaatcactac cgccttgtgc tagtgccctc
2341 gagaagagtt attgctctag aaagttgagt tctcattttt ttaacctgtt atagatttca
2401 gaggatttga accataatcc ttggaaaact taagttctca ttcaccccag tttttcctcc
2461 aggttgttac taaggatatt cagggatgag tttaaaccct aaatataacc ttaattattt
2521 agtgtaaaca tgtctgttga ataatacttg tttaagtgtt aaaaaaaaaa aaaaaaagaa
2581 aaaaaaaaaa aaaa
//