LOCUS BC031051 3057 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cadherin 18, type 2, mRNA (cDNA clone MGC:33098
IMAGE:5278717), complete cds.
ACCESSION BC031051
VERSION BC031051.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3057)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3057)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16445394.
FEATURES Location/Qualifiers
source 1..3057
/db_xref="H-InvDB:HIT000041220"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33098 IMAGE:5278717"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3057
/gene="CDH18"
/gene_synonym="CDH14"
/gene_synonym="CDH14L"
/gene_synonym="CDH24"
/gene_synonym="EY-CADHERIN"
/db_xref="GeneID:1016"
/db_xref="HGNC:HGNC:1757"
/db_xref="MIM:603019"
CDS 491..2863
/gene="CDH18"
/gene_synonym="CDH14"
/gene_synonym="CDH14L"
/gene_synonym="CDH24"
/gene_synonym="EY-CADHERIN"
/codon_start=1
/product="cadherin 18, type 2"
/protein_id="AAH31051.1"
/db_xref="GeneID:1016"
/db_xref="HGNC:HGNC:1757"
/db_xref="MIM:603019"
/translation="MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRNQTKHIEGE
TEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFI
IDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFT
DGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIR
TALHNMDGEAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNTPRFPQKHYQLY
VPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGMGIFSISTDKETREGILSLKKP
LNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEV
YENAKIGTVVGTVLAQDPDSINSLVRYFINYNVEDDRFFNIDANTGTIRTTKVLDREE
TPWYNITVTASEIDNPDLLSHVTVGIRVLDVNDNPPELAREYDIIVCENSKPGQVIHT
ISATDKDDFANGPRFNFFLDERLPVNPNFTLKDNEDNTASILTRRRRFSRTVQDVYYL
PIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVL
ILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTGAFDITALRNPSAA
EELKYRRDIRPEVKLTPRHQTSSTLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAY
EGQRSEAGSISSLDSATTQSDQDYHYLGDWGPEFKKLAELYGEIESERTT"
BASE COUNT 923 a 667 c 697 g 770 t
ORIGIN
1 gggtctgggc tttccgagga cggcgagcag ctgtgcccag agctctggga aagtcccctc
61 tctttgcttc ttataaatta agttcctttc caccagttag ggcaagtccg ccaagataga
121 ctgaagagga gcaagaacag aaacagggag ccagttacag atctatccca agaattctgg
181 ggagagatga tggtgtctgc agcagagtga cagcagtgga gattgagaga aaaggttgaa
241 aatggttgct tgtgttcaac tactgtgaag agttggaatc agacaactac ggcttttatt
301 ttccaagtgg ttcagaatgt aaatatgatc tgacctttcc ctgatggaca gttaaatcat
361 ggacacgcta aacaatttac tttggactgt ccttcctaaa gatgctctgg cttctctctt
421 gaatgctcac taagctttcg tagctgacaa ggaaaggaag gaaaactgtg aactggaaag
481 ttatcttaca atgaaaatta ctagcacatc ttgcatctgt ccagtcctag tgtgtctctg
541 ttttgtgcag aggtgttatg gaactgctca ccacagctcc atcaaggtga tgagaaacca
601 aaccaaacac attgaaggtg aaaccgaagt ccatcatcgt cccaaaaggg gatgggtatg
661 gaatcagttc tttgttttag aagaacatat gggaccagat cctcagtatg ttggaaagct
721 gcactccaat tctgacaaag gtgatggatc tgtcaagtac atccttactg gagagggtgc
781 tgggactata tttatcattg acgataccac gggtgatatc cactcaacaa aaagcctaga
841 cagagagcag aagacccact atgtgcttca tgctcaagct attgatagac gtacaaacaa
901 acctcttgag cctgaatccg agttcatcat caaagtgcaa gacatcaatg acaacgctcc
961 aaaattcaca gatggaccat acattgttac tgtgcctgaa atgtcagata tgggtacctc
1021 tgttctacag gtgacagcta ctgatgcaga tgaccctacc tatggaaaca gcgctcgggt
1081 ggtttacagc attctccagg gacaacccta cttctccgtc gaccctaaaa caggagttat
1141 tagaacggcc ttacataaca tggacggaga agccagagaa cattactccg tagtcattca
1201 agccaaagac atggctgggc aagttggagg gctttcagga tctacaacag tcaacatcac
1261 cttaaccgat gtcaatgaca acacaccacg ctttcctcaa aaacactatc agctatatgt
1321 tcctgagtca gctcaagttg gttcagctgt tgggaaaatc aaggcaaatg atgctgacac
1381 tggctcaaat gctgacatga cctactccat cataaatggt gatggcatgg gaatattctc
1441 aatctccact gacaaagaga ccagagaagg aatcctttct ttaaagaagc cactgaacta
1501 tgagaaaaag aagtcatata ccctcaacat agaaggagca aatacacatc ttgattttcg
1561 cttttctcac ttgggtcctt ttaaagatgc tactatgctg aagatcattg ttggggatgt
1621 agatgaacca ccactatttt ccatgccttc ctacctcatg gaagtctacg aaaatgccaa
1681 gattgggacc gtcgttggta cagttttggc acaagatcct gacagtatta acagcttagt
1741 aagatacttc atcaactaca atgttgaaga cgacagattt ttcaacattg atgccaatac
1801 tgggaccatt aggactacaa aggttctcga cagagaagaa actccatggt acaacatcac
1861 agtcactgct tcagaaattg ataatcctga tttgctgagc catgtcacag tgggtattag
1921 agttctggat gtcaatgaca atccacccga acttgccagg gaatatgata ttattgtatg
1981 tgaaaattct aagcctggcc aggttattca taccatcagt gccactgata aagatgattt
2041 tgccaatgga ccaaggttta acttctttct tgatgagcgc ctgcctgtaa atccaaactt
2101 cactctgaag gacaatgaag ataacacagc cagcattctg acaaggcgga ggagatttag
2161 tcgaactgtt caggatgtgt attatctgcc cattatgatc tctgatggtg gaatcccctc
2221 tctcagcagc agcagcaccc tcaccatcag ggtttgtgca tgcgagagag atgggcgtgt
2281 gcggacctgc catgcagaag ccttcctgtc ctcggctggt ttgagtacag gagccttaat
2341 cgctattctt ctctgtgttc tcattctcct ggcaattgtg gtacttttta tcaccctgag
2401 gcgcagcaaa aaagagccct tgatcatttc agaagaggat gtacgggaga acgtggtcac
2461 ctatgatgat gaaggaggcg gagaggaaga cacaggggcc tttgacatca cagccttgag
2521 gaatccttct gctgctgagg agctcaagta ccggagggat atcagacctg aagtgaagct
2581 cactcccaga caccagacat catccaccct ggaaagcata gatgttcagg aatttattaa
2641 gcaaagactg gcagaagcag acctagaccc tagcgttccc ccttatgact ctcttcagac
2701 ttatgcctat gagggtcaga gatcagaagc tgggtctatc agctcgctgg attcagcaac
2761 gacacaatca gaccaggatt atcactacct tggagactgg ggacccgagt ttaaaaagtt
2821 agctgaactc tatggagaaa tagaatctga aagaacaact tagggggtca gttcttgcaa
2881 ccttgtggaa tttgcttcct gagtaagtgg atatacaacc tcagcaatga caaggaagaa
2941 gtgtggaaac agtacttgga actgaggaag ctggacacag ctcctgtaga aacaagtgcc
3001 cttttcatga tcgaaactgg gttatttaat tggaagaaag caaaaaaaaa aaaaaaa
//