LOCUS BC030826 4789 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens praja ring finger 2, mRNA (cDNA clone MGC:26115
IMAGE:4811738), complete cds.
ACCESSION BC030826
VERSION BC030826.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4789)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4789)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: j Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281511.
FEATURES Location/Qualifiers
source 1..4789
/db_xref="H-InvDB:HIT000041159"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26115 IMAGE:4811738"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4789
/gene="PJA2"
/gene_synonym="Neurodap1"
/db_xref="GeneID:9867"
/db_xref="HGNC:HGNC:17481"
CDS 117..2243
/gene="PJA2"
/gene_synonym="Neurodap1"
/codon_start=1
/product="praja ring finger 2"
/protein_id="AAH30826.1"
/db_xref="GeneID:9867"
/db_xref="HGNC:HGNC:17481"
/translation="MSQYTEKEPAAMDQESGKAVWPKPAGGYQTITGRRYGRRHAYVS
FKPCMTRHERSLGRAGDDYEVLELDDVPKENSSGSSPLDQVDSSLPSEPIFEKSETEI
PTCGSALNQTTESSQSFVAVHHSEEGRDTLGSSTNLHNHSEGEYIPGACSASSVQNGI
ALVHTDSYDPDGKHGEDNDHLQLSAEVVEGSRYQESLGNTVFELENREAEAYTGLSPP
VPSFNCEVRDEFEELDSVPLVKSSAGDTEFVHQNSQEIQRSSQDEMVSTKQQNNTSQE
RQTEHSPEDAACGPGHICSERNTNDREKNHGSSPEQVVRPKVRKLISSSQVDQETGFN
RHEAKQRSVQRWREALEVEESGSDDLLIKCEEYDGEHDCMFLDPPYSRVITQRETENN
QMTSESGATAGRQEVDNTFWNGCGDYYQLYDKDEDSSECSDGEWSASLPHRFSGTEKD
QSSSDESWETLPGKDENEPELQSDSSGPEEENQELSLQEGEQTSLEEGEIPWLQYNEV
NESSSDEGNEPANEFAQPAFMLDGNNNLEDDSSVSEDLDVDWSIFDGFADGLGVAEAI
SYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLED
HTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAV
IEASAAPSSEPDPDAPPSNDSIAEAP"
BASE COUNT 1538 a 793 c 974 g 1484 t
ORIGIN
1 ctctcgctcc ggagccgctg cacatttcgg aatcttctgc ggcttgtcca tagtgtgaat
61 aaaaactaaa tcacatctat aattctactg aactggtcat acagacgctg ccatatatgt
121 cacagtacac tgaaaaggag ccagcagcaa tggaccaaga atctggtaag gctgtctggc
181 ccaaaccagc aggagggtat cagacaatta caggcaggag atatggaaga agacatgctt
241 atgtcagttt taaaccatgt atgaccagac atgaaagaag cttaggtcgg gctggtgatg
301 actatgaagt gttggaacta gatgatgttc caaaggaaaa ttcctcaggt tccagtcctt
361 tggatcaagt tgattcttct ttaccaagtg aacctatatt tgaaaaaagt gaaacagaaa
421 ttcccacttg tggttcagca ttgaatcaaa ccactgagag cagtcaatcc tttgttgcag
481 tacatcacag tgaggaaggc agggatacct taggaagcag tacaaatctt cataatcact
541 ctgagggaga gtatattcca ggagcttgta gtgcttcaag tgtccaaaat ggaattgcat
601 tggttcatac agactcttat gatccagatg gcaaacatgg agaagataat gaccatcttc
661 aactttctgc agaagtcgtg gaaggtagta gataccagga atcattaggc aatacagtat
721 ttgagttgga aaacagagag gcagaggcat acactggtct ttcaccacca gttccctcat
781 ttaactgtga agtaagagat gagtttgaag agttagattc tgtaccatta gtgaaaagtt
841 ctgctggtga tactgagttt gtccatcaga atagccagga aattcagagg tcttctcaag
901 atgaaatggt tagtacgaaa caacaaaata atactagcca ggaaagacag acagaacatt
961 cacctgaaga tgcagcctgt ggtccagggc atatttgtag tgaacgaaat accaatgata
1021 gggaaaagaa ccatggaagt tctcctgaac aggtagtgag gccaaaagtt agaaaactga
1081 taagttcaag ccaggtggac caagaaacag gttttaatag gcatgaggcg aaacaaagaa
1141 gtgttcaaag atggagagag gctttggaag ttgaggaaag tggctcagat gacctcttaa
1201 taaaatgtga agaatatgat ggagagcatg actgtatgtt cttggatcca ccatactcaa
1261 gagttattac acaaagggaa acagaaaata accaaatgac atcagaaagt ggagccacag
1321 cgggaaggca agaagtggat aacacctttt ggaatggctg tggagattat taccaactct
1381 atgacaaaga tgaagatagt tctgaatgca gtgatgggga atggtctgct tctttgcctc
1441 atcgattttc tggtacagaa aaagatcaat cctcaagtga tgaaagctgg gagactctgc
1501 caggaaaaga tgagaatgaa cctgagctac aaagtgatag cagtggccct gaagaagaaa
1561 accaagaatt atctcttcag gaaggggaac agacatcctt ggaagaggga gaaattcctt
1621 ggttacagta caatgaagtc aatgaaagca gcagtgatga gggaaatgaa cctgccaatg
1681 aatttgcaca gccagctttc atgttggatg gtaacaataa cctggaggat gactccagtg
1741 tgagtgaaga cttagatgtg gattggagca tatttgatgg ctttgcagat ggactaggag
1801 ttgctgaagc tatttcatat gtggatcctc agttccttac atacatggca ctagaagaac
1861 gcttagccca ggctatggag actgctctgg cccatttaga gtctcttgca gtggatgttg
1921 aggtggccaa tccaccagct agtaaggaaa gcattgatgg tcttccagag acccttgttc
1981 ttgaagatca cactgctatt ggtcaggaac aatgctgtcc aatctgttgc agtgagtata
2041 ttaaggatga tatagcaaca gagttgccct gtcaccattt ctttcacaaa ccttgtgtct
2101 caatttggct acaaaagtcg ggaacatgcc ctgtgtgccg ccgtcatttc ccacctgcgg
2161 ttattgaagc atctgcagct ccttcctctg agcctgatcc tgatgcccca ccttcgaatg
2221 acagtattgc agaagcaccc taaaccttga cagttgaaat gagatcagtg tatcaaagta
2281 aatctgcaaa ttccttctaa atttcatgtg caaataatta tatataaata tatttaaaaa
2341 tgctatatat agtatatgcc atagtttaga aagaatatta acctttctaa actaaattta
2401 ggtttgcaga aagtattaaa catttttaag ctgaatgtta agacagtgca tccattttct
2461 ttagttgaat atgtttgtat taattgtaaa gccaagctta tcagttgact ctctccagaa
2521 taaataatca tctgtgtggc atacgttatt ggctttgtct gtaatactgc cactaagtga
2581 ttataattaa gctgtcatgt ttgcatcaaa tgtaaagact gtgttcacaa ccgtagtaaa
2641 atttggtttc attggaaatg aaacaaattc taaagtatgc tttttcacta gtccctttga
2701 ttttgctata tcataacctc ttggttcata tgctgagaaa tttttcagaa agtccatttt
2761 tgtttaaaat tagaactttt cagaatgcca aatgaaggct aaaattttgg ccagaacatt
2821 acaaaagttt taaatcgtag acgtaactcc ccctgaaata aagttaggta gtaaaatcct
2881 taatgaaacc agtggatgtg cttaacgtaa ggttagtaaa gcatacaaag aatctagtgt
2941 gctcagggct tggtacaatg agctgaatta gatggcctta tgaaactctt tctaacctct
3001 tacccaacct gtttctcctt ggttaaaatt atacttgaag gcccagaaca ctcatggcac
3061 atttgtttaa tattgcttat agttagttta aggtaatttt gcttctacag tattttggaa
3121 ggtctgaaaa cttgcacagg gtcatctttg taattatata accccaaact aagatgcaca
3181 atgtctcctt caggtgatca cacacagtgg acgagtatgt gcaaacatgg acataatagt
3241 tcacttacaa atgtgatttg atgttaacac tagagaatga tgactgtaga acatttgagc
3301 aagtaaaata gtaaagcaca tagtgagtgt atgtccgtct aactggtaca ttgataattt
3361 agtttgggca cataaaagga atatttatat ggcttcccaa atgcagagtt acatcttatt
3421 cgtgtatttc tctgagtatt tatatcccgt ctcctttttt cattcttaaa aataaatgaa
3481 ttttcactgt tggcacatat gaggcttaaa tataaggaac ataacacttg cattctaatt
3541 tttgcatata ttgtaaatgt gtctggtatt tacagcaaaa tactgtgtat ccttttatgg
3601 gtaaaacaaa agtgaacatt gcatgcatgt aatgtgatga atttgtaatt taggagttct
3661 ttggggcttc tgtgacttgg gtaatgctta cattcaggcc ttaatgttgc attagctagc
3721 atgttttccc tctgatgtat atagtcactg ttgtataaac taatctttgc ttgttttcta
3781 ctctgtgatc tttccatatc atatttcatt aatgatcagt tagtgtcaag gagtcaaaac
3841 agattaaaat taatttcatg tgtatatggt ggaaatttgt ggctagtgtg atttttgttt
3901 gtttcctttt aagtactgtt gatcagttgt gacacttact ggttaaactt acgttgctaa
3961 agatttctct ataataagcc acacattata tttagactat attaagggac cttggttttc
4021 ttctagatag cagctgtccc aaagaaaata tttcttcttt gtctgttaag atttagctat
4081 tatctgccag ttgttaagag gttttggttc caaactcaac cagcaatgtt gagagctgaa
4141 cttaagatag ctgttgtact ttttgctttc catctgttac tgtccttcat tcttggctcc
4201 ctactatcta taaacagctg ctgtgaagaa gaaaagttga ataagagttg gcttaaattt
4261 taaaaaagaa aaagaaaatt gaggttttag gattttcatg gtaacaagct ctggtataag
4321 ctaaggctgg caagttcaga tactaaaata ttatttgatc atatcttgga tccttttgaa
4381 aaagttaaga ctatatgaag gtaaattaga aataagtatg aatattaata aaatagcatt
4441 tatcttattt ctctatttta tgttgtgact taacctaatt ttattttttt aacattttct
4501 tatttcttat aatatgaatg ctgatattta aaggtagatc tatgtggtat tctttgtgtt
4561 tcttaattgt ttaactctta agattatttg tgatctggat ttatgtattt gttagataca
4621 tacgaattgt taaaatggaa tgcaagtttt tcaaaagccc aggtctaaat gtaatggttg
4681 gtttattgtt ctataacccc agcccatcat tttctgtgta aatcataaac aataaacaga
4741 atatactcgg tggtcaaaaa aaaaaaaaaa aagaaaaaaa aaaaaaaaa
//