LOCUS BC030653 3818 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cadherin 13, H-cadherin (heart), mRNA (cDNA clone
MGC:33162 IMAGE:4811561), complete cds.
ACCESSION BC030653
VERSION BC030653.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3818)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3818)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030653.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: c Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61676095.
FEATURES Location/Qualifiers
source 1..3818
/db_xref="H-InvDB:HIT000041090"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33162 IMAGE:4811561"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3818
/gene="CDH13"
/gene_synonym="CDHH"
/db_xref="GeneID:1012"
/db_xref="HGNC:HGNC:1753"
/db_xref="MIM:601364"
CDS 92..2233
/gene="CDH13"
/gene_synonym="CDHH"
/codon_start=1
/product="cadherin 13, H-cadherin (heart)"
/protein_id="AAH30653.1"
/db_xref="GeneID:1012"
/db_xref="HGNC:HGNC:1753"
/db_xref="MIM:601364"
/translation="MQPRTPLVLCVLLSQVLLLTSAEDLDCTPGFQQKVFHINQPAEF
IEDQSILNLTFSDCKGNDKLRYEVSSPYFKVNSDGGLVALRNITAVGKTLFVHARTPH
AEDMAELVIVGGKDIQGSLQDIFKFARTSPVPRQKRSIVVSPILIPENQRQPFPRDVG
KVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSMTRTLDREVIAVYQLFVETT
DVNGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPA
TDNALLRYNIRRQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQ
DMAGLDVGLTGTATATIMIDDKNDHSPKFTKKEFQATVEEGAVGVIVNLTVEDKDDPA
TGAWRAAYTIINGNPGQSFEIHTNPQTNEGMLSVVKPLDYEISAFHTLLIKVENEDPL
VPDVSYGPSSTATVHITVLDVNEGPVFYPDPMMVTRQEDLSVGSVLLTVNATDPDSLQ
HQTIRYSVYKDPAGWLNINPINGTVDTTAVLDRESTFVDNSVYTALFLAIDSGNPPAT
GTGTLLITLEDVNDNAPFIYPTVAEVCDDAKNLSVVILGASDKDLHPNTDPFKFEIHK
QAVPDKVWKISKINNTHALVSLLQNLNKANYNLPIMVTDSGKPPMTNITDLRVQVCSC
RNSKVDCNAAGALRFSLPSVLLLSLFSLACL"
BASE COUNT 1079 a 921 c 844 g 974 t
ORIGIN
1 ctctcctcaa agcctggctc ccacggaaaa tatgctcagt gcagccgcgt gcatgaatga
61 aaacgccgcc gggcgcttct agtcggacaa aatgcagccg agaactccgc tcgttctgtg
121 cgttctcctg tcccaggtgc tgctgctaac atctgcagaa gatttggact gcactcctgg
181 atttcagcag aaagtgttcc atatcaatca gccagctgaa ttcattgagg accagtcaat
241 tctaaacttg accttcagtg actgtaaggg aaacgacaag ctacgctatg aggtctcgag
301 cccatacttc aaggtgaaca gcgatggcgg cttagttgct ctgagaaaca taactgcagt
361 gggcaaaact ctgttcgtcc atgcacggac cccccatgcg gaagatatgg cagaactcgt
421 gattgtcggg gggaaagaca tccagggctc cttgcaggat atatttaaat ttgcaagaac
481 ttctcctgtc ccaagacaaa agaggtccat tgtggtatct cccattttaa ttccagagaa
541 tcagagacag cctttcccaa gagatgttgg caaggtagtc gatagtgaca ggccagaaag
601 gtccaagttc cggctcactg gaaagggagt ggatcaagag cctaaaggaa ttttcagaat
661 caatgagaac acagggagcg tctccatgac acggaccttg gacagagaag taatcgctgt
721 ttatcaacta tttgtggaga ccactgatgt caatggcaaa actctcgagg ggccggtgcc
781 tctggaagtc attgtgattg atcagaatga caaccgaccg atctttcggg aaggccccta
841 catcggccac gtcatggaag ggtcacccac aggcaccaca gtgatgcgga tgacagcctt
901 tgatgcagat gacccagcca ccgataatgc cctcctgcgg tataatatcc gtcggcagac
961 gcctgacaag ccatctccca acatgttcta catcgatcct gagaaaggag acattgtcac
1021 tgttgtgtca cctgcgctgc tggaccgaga gactctggaa aatcccaagt atgaactgat
1081 catcgaggct caagatatgg ctggactgga tgttggatta acaggcacgg ccacagccac
1141 gatcatgatc gatgacaaaa atgatcactc accaaaattc accaagaaag agtttcaagc
1201 cacagtcgag gaaggagctg tgggagttat tgtcaatttg acagttgaag ataaggatga
1261 ccccgccaca ggtgcatgga gggctgccta caccatcatc aacggaaacc ccgggcagag
1321 ctttgaaatc cacaccaacc ctcaaaccaa cgaagggatg ctttctgttg tcaaaccatt
1381 ggactatgaa atttctgcct tccacaccct gctgatcaaa gtggaaaatg aagacccact
1441 cgtacccgac gtctcctacg gccccagctc cacagccacc gtccacatca ctgtcctgga
1501 tgtcaacgag ggcccagtct tctacccaga ccccatgatg gtgaccaggc aggaggacct
1561 ctctgtgggc agcgtgctgc tgacagtgaa tgccacggac cccgactccc tgcagcatca
1621 aaccatcagg tattctgttt acaaggaccc agcaggttgg ctgaatatta accccatcaa
1681 tgggactgtt gacaccacag ctgtgctgga ccgtgagtcc acatttgtcg acaacagcgt
1741 gtacactgct ctcttcctgg caattgacag tggcaaccct cccgctacgg gcactgggac
1801 tttgctgata accctggagg acgtgaatga caatgccccg ttcatttacc ccacagtagc
1861 tgaagtctgt gatgatgcca aaaacctcag tgtagtcatt ttgggagcat cagataagga
1921 tcttcacccg aatacagatc ctttcaaatt tgaaatccac aaacaagctg ttcctgataa
1981 agtctggaag atctccaaga tcaacaatac acacgccctg gtaagccttc ttcaaaatct
2041 gaacaaagca aactacaacc tgcccatcat ggtgacagat tcagggaaac cacccatgac
2101 gaatatcaca gatctcaggg tacaagtgtg ctcctgcagg aattccaaag tggactgcaa
2161 cgcggcgggg gccctgcgct tcagcctgcc ctcagtcctg ctcctcagcc tcttcagctt
2221 agcttgtctg tgagaactcc tgacgtctga agcttgactc ccaagtttcc atagcaacag
2281 gaaaaaaaaa aatctatcca aatctgaaga ttgcggttta cagctatcga acttcacaac
2341 taggcctcaa ttgttccggt tttttatttt ctttacaatt tcacttagtc tgtacttcat
2401 cattttgaca gcatcttcct ccctccttta attaatggaa tcttctgaat tttccctgaa
2461 tgtttaaaga tcatgacata tgacttgatc ttctgggagc aggaacaatg actacttttt
2521 ctggtgtgtt aacatgtcgc tagccagtgc tccaggcacc cagctttgtc tgtgggttag
2581 tattggtgta tgtatgagta tctgtatgta tatatacacg gtatttatag agagagacta
2641 tcctggagaa gcctcgtttt gatgccattc ttccttgcaa ggttaagcaa ggtgggtgga
2701 aactaagaca cctgaaccct ccagggcctc ccgcatcaag gtcagcatga ggacagacca
2761 cagagctgtc acttttgctc cgaagctact tctccactgt cccgttcagt ctgaatgctg
2821 ccacaaccag ccaggcaggt ccacagagag ggagagcaga gaaagaagtc ctttctcttt
2881 attgagttcg aggactacaa ccaatttaca ctgccatctg atgccgtgat cctgagccaa
2941 ggaggtgagg agcagagcag gcaatttcac caccaaatgc caagaaaagg gctgacattt
3001 tctttcatgg gcaccaacct gcatttgtat gtgtcccgaa tccacagtcg tactgattct
3061 aatggggaca cagatcatgg tagagaatct ctccctcctc agtaaatgta caactgcacc
3121 tgtcatcatg gaggtcatac atgcatacaa agaggtgtac aggtaccatc ttgtatacac
3181 atatataccc acatgtacag acatacattt atgcgcattc acgctgtttg tttcatatat
3241 acaggcataa aatagagtaa atacaggtag ttttaaaagt acccttttgt gtgaattgac
3301 taccgttgtt tgcaaacccg aaaataaaag acgttcatta tgtatgaaaa gtaactgatt
3361 tgtattctgt gagcatgtaa aagcggaaag ttagtgcttg ttttaagatt accttcttgt
3421 tgataaacca taaatgaatc atcaaagctc acaccaaatt tttctatcaa ataaaactag
3481 tgacagcttg tggcttttta ttagagctcg ccacgaacta gggtaaggtg agtgtcttag
3541 catattttaa tgcagttgct tactaaaggt tttaaccgca catgcacaca cacacgcttt
3601 cttatgcaat ctatgtttgc acttgtgctt tcagttagcc ttctgtagga agtagaagtc
3661 atatgttgtc tttgttgtag tgaaattata cagatagagt tccatatatt gtatttgttt
3721 caatggtaaa tccttttgga acatatagaa tgcagagatt tttttttcca ttaaaataaa
3781 tgggtattgg tggttaaaac tgaaaaaaaa aaaaaaaa
//