LOCUS BC030647 2654 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens chromosome 1 open reading frame 62, mRNA (cDNA clone
IMAGE:4826614), complete cds.
ACCESSION BC030647
VERSION BC030647.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2654)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2654)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030647.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: o Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34303954
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2654
/db_xref="H-InvDB:HIT000041088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4826614"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2654
/gene="C1orf62"
/gene_synonym="MGC26989"
/gene_synonym="RP11-475E11.3"
/db_xref="GeneID:254268"
/db_xref="HGNC:HGNC:28398"
CDS 260..1507
/gene="C1orf62"
/gene_synonym="MGC26989"
/gene_synonym="RP11-475E11.3"
/codon_start=1
/product="C1orf62 protein"
/protein_id="AAH30647.1"
/db_xref="GeneID:254268"
/db_xref="HGNC:HGNC:28398"
/translation="MDEADFSEHTTYKQEDLPYDGDLSQIKIGNDYSFTSKKDGLEVL
NQIIFIADDPQEKAMHSETCGNTAVTIPLGKITENAANKKDEKEKQCTAALHIPANEG
DASKSSISDILLHHLSKEPFLRGQGIDCETLPEISNADSFEEEAIIKSIISCYNKNSW
PKEQTPGLTDQLNPKRDGENSNKPGSATTTEENTSDLEGPVAAGDSSHQENVNVLTKT
KGPGDKQKSYQGQSPQKQQTEKANSGNTFKYGQGQVHYQLPDFSKIAPKVKIPKNKII
NKPLAIAKQASFSSKSRDKPTLVQDSLETTPESNCVEKQHQEQKGKITEPSQQIQMEP
IVHIHQELLTGIESEASLSKLSPTSQKGTSSSSSYIFQKISQGKQMCQKLKEQTDQLK
TKVQEFSKRIKQDSPYHLQDKKL"
BASE COUNT 887 a 561 c 503 g 703 t
ORIGIN
1 agaatatcaa tttggattct acagaaaggt tctgttggat tctgagcgga acctctttgg
61 atgtgccttt ggatttcaag attgagccaa gtgttgacat gggaagatgc tccagttcct
121 ccagttatct caaagaagct cattaccttg ctaaggaata gcacacagtg aagacagtca
181 gtgagaacca gagctattgt tacaactgac agcagccagc tcaggaggca gaggacgaga
241 gcgatcgggc tgcacacaca tggatgaggc tgatttttca gaacacacga cttataagca
301 ggaggatttg ccttatgatg gggacctctc tcagattaag ataggcaatg attacagttt
361 tacctcaaaa aaggatggcc ttgaagtctt aaatcaaatt attttcatag cagatgaccc
421 tcaagagaag gctatgcata gtgagacttg tggaaataca gctgtgacca tacccctggg
481 taaaattact gaaaatgctg ccaacaaaaa agacgagaaa gagaaacaat gcactgcagc
541 tcttcatatt ccagcaaatg aaggagacgc ttctaagtca agcatttctg atattttact
601 tcatcatctt tccaaagagc cattcttaag aggtcaaggc attgattgtg aaaccctccc
661 agagatctca aatgccgaca gttttgaaga ggaagctatt attaaaagta ttatttcatg
721 ttataataag aattcttggc caaaagaaca aaccccagga ctcactgacc aactcaaccc
781 gaaaagggat ggtgaaaaca gcaataagcc tggttctgcc accacgacag aggaaaatac
841 ctctgattta gaagggccag tggctgctgg agatagcagc catcaagaaa atgtgaatgt
901 tctaactaaa accaagggtc caggtgataa acaaaaaagt tatcaagggc agtcacccca
961 gaaacagcag actgaaaaag caaattcagg caacacgttc aaatacggcc aaggtcaagt
1021 tcattaccag ctccctgatt tctctaagat tgctcccaaa gtgaaaattc ctaaaaataa
1081 gataattaat aaaccacttg caatagctaa acaagccagc ttttcttcca agtcgagaga
1141 taaacccact cttgtgcaag atagtctaga aaccacgcct gagtcaaact gtgttgaaaa
1201 acaacatcaa gagcagaaag ggaaaatcac tgaaccttca caacaaatcc agatggagcc
1261 catagtacat atccaccaag aacttctcac aggaatagaa tctgaggcaa gtctctctaa
1321 gttgtcacca acctctcaga aaggcacttc ctcaagttct tcttacatat ttcaaaagat
1381 atcccaaggg aaacagatgt gtcagaagtt gaaagaacag actgatcaac tgaagactaa
1441 agtacaagaa ttttccaaaa gaataaaaca ggactctcct taccatttgc aagacaagaa
1501 gctgtgactt caccgctgca ggtcctggag aaactgcagg gacaccttga actgctggag
1561 cagaactttc tggccaccaa ggacaagcat ctgactttgc agcagcaagt ccacaagcac
1621 gaatcaacaa tcgttggtga ctttgatcca gaaagaaaag tggaaggtga aatcttcaaa
1681 ttggagatgc tgcttgaaga tgttaaagag aaaatggatg aaagcaaata tacttcagct
1741 ccttcccttc ctgtgagttc tccagttacc ctggatgact tggcctccac cttctcttca
1801 ctctcaaatg aggtaataca gcaatgtaca gtctaatttt gtgccaggaa aaatggtgtt
1861 tttgcattta tagactccta attcatggat tcactgaatt ccatttttaa tatctcatga
1921 aaatttaact ttccaaagtc ccatgaatta tattatttta aatggaacca gcttttaaag
1981 attagaagct atttcaagtg ttaatttttg aaacatcttt atagtttagg atgtaacaat
2041 gctgtttaaa tccattaaac caccgaagag ctatttcttc caaattaata agaaaatttt
2101 tgtagatcat gcctggaaga aataattttt tttcttcata gttttgtact caccaggctg
2161 gagtgtggta gcacgatctc agctcactgc aacctttgtc tcccgggctc aagtgattct
2221 cctccctcag cctcccaagc agctgagatt acaggtgcat gccaccactg cctggctaat
2281 tttttatatt tttggtagag atggggtttc accatgttgg ccaggctggt ctcaaactcc
2341 tgacctcaag tgatccgccc gcttggcctt ccaaagtgtt gggattacag gcatgagcca
2401 cctgaaaata aagaatagca cactcagtga aataattatt tcccatgaat ccacttctgc
2461 attttccttc tctcaagtta aattcttttg gatttctact tatgcaagat tgggaattca
2521 aattaaccac cactgtcttt ctatactttt tgcctttgta gcctcaacta tcagaacatt
2581 cagactaaaa tcaaaattct gagaaacaga atcatttaaa taaatacctt aaattgacaa
2641 aaaaaaaaaa aaaa
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