LOCUS BC030645 4065 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens platelet derived growth factor D, mRNA (cDNA clone
MGC:26867 IMAGE:4824526), complete cds.
ACCESSION BC030645
VERSION BC030645.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4065)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4065)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030645.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: i Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47132544.
FEATURES Location/Qualifiers
source 1..4065
/db_xref="H-InvDB:HIT000041086"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26867 IMAGE:4824526"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4065
/gene="PDGFD"
/gene_synonym="IEGF"
/gene_synonym="MGC26867"
/gene_synonym="MSTP036"
/gene_synonym="SCDGF-B"
/db_xref="GeneID:80310"
/db_xref="HGNC:HGNC:30620"
/db_xref="MIM:609673"
CDS 453..1547
/gene="PDGFD"
/gene_synonym="IEGF"
/gene_synonym="MGC26867"
/gene_synonym="MSTP036"
/gene_synonym="SCDGF-B"
/codon_start=1
/product="platelet derived growth factor D"
/protein_id="AAH30645.1"
/db_xref="GeneID:80310"
/db_xref="HGNC:HGNC:30620"
/db_xref="MIM:609673"
/translation="MHRLIFVYTLICANFCSCRDTSATPQSASIKALRNANLRRDDLY
RRDETIQVKGNGYVQSPRFPNSYPRNLLLTWRLHSQENTRIQLVFDNQFGLEEAENDI
CRYDFVEVEDISETSTIIRGRWCGHKEVPPRIKSRTNQIKITFKSDDYFVAKPGFKIY
YSLLEDFQPAAASETNWESVTSSISGVSYNSPSVTDPTLIADALDKKIAEFDTVEDLL
KYFNPESWQEDLENMYLDTPRYRGRSYHDRKSKVDLDRLNDDAKRYSCTPRNYSVNIR
EELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKR
RGRAKTMALVDIQLDHHERCDCICSSRPPR"
BASE COUNT 1226 a 842 c 828 g 1169 t
ORIGIN
1 ggcagagcag gtttaggccc ggcctgggaa actggggagc tgaggtgctc gcgccgccgc
61 tctgagcccg agtgcgcgcc tctcaggggc cgcggccggg gctggagaac gctgctgctc
121 cgctcgcctg ccccgctaga ttcggcgctg cccgccccct gcagcctgtg ctgcagctgc
181 cggccaccgg agggggcgaa caaacaaacg tcaacctgtt gtttgtcccg tcaccattta
241 tcagctcagc accacaagga agtgcggcac ccacacgcgc tcggaaagtt cagcatgcag
301 gaagtttggg gagagctcgg cgattagcac agcgacccgg gccagcgcag ggcgagcgca
361 ggcggcgaga gcgcagggcg gcgcggcgtc ggtcccggga gcagaacccg gctttttctt
421 ggagcgacgc tgtctctagt cgctgatccc aaatgcaccg gctcatcttt gtctacactc
481 taatctgcgc aaacttttgc agctgtcggg acacttctgc aaccccgcag agcgcatcca
541 tcaaagcttt gcgcaacgcc aacctcaggc gagatgactt gtaccgaaga gatgagacca
601 tccaggtgaa aggaaacggc tacgtgcaga gtcctagatt cccgaacagc taccccagga
661 acctgctcct gacatggcgg cttcactctc aggagaatac acggatacag ctagtgtttg
721 acaatcagtt tggattagag gaagcagaaa atgatatctg taggtatgat tttgtggaag
781 ttgaagatat atccgaaacc agtaccatta ttagaggacg atggtgtgga cacaaggaag
841 ttcctccaag gataaaatca agaacgaacc aaattaaaat cacattcaag tccgatgact
901 actttgtggc taaacctgga ttcaagattt attattcttt gctggaagat ttccaacccg
961 cagcagcttc agagaccaac tgggaatctg tcacaagctc tatttcaggg gtatcctata
1021 actctccatc agtaacggat cccactctga ttgcggatgc tctggacaaa aaaattgcag
1081 aatttgatac agtggaagat ctgctcaagt acttcaatcc agagtcatgg caagaagatc
1141 ttgagaatat gtatctggac acccctcggt atcgaggcag gtcataccat gaccggaagt
1201 caaaagttga cctggatagg ctcaatgatg atgccaagcg ttacagttgc actcccagga
1261 attactcggt caatataaga gaagagctga agttggccaa tgtggtcttc tttccacgtt
1321 gcctcctcgt gcagcgctgt ggaggaaatt gtggctgtgg aactgtcaac tggaggtcct
1381 gcacatgcaa ttcagggaaa accgtgaaaa agtatcatga ggtattacag tttgagcctg
1441 gccacatcaa gaggaggggt agagctaaga ccatggctct agttgacatc cagttggatc
1501 accatgaacg atgtgattgt atctgcagct caagaccacc tcgataagag aatgtgcaca
1561 tccttacatt aagcctgaaa gaacctttag tttaaggagg gtgagataag agaccctttt
1621 cctaccagca accaaactta ctactagcct gcaatgcaat gaacacaagt ggttgctgag
1681 tctcagcctt gctttgttaa tgccatggca agtagaaagg tatatcatca acttctatac
1741 ctaagaatat aggattgcat ttaataatag tgtttgaggt tatatatgca caaacacaca
1801 cagaaatata ttcatgtcta tgtgtatata gatcaaatgt tttttttggt atatataacc
1861 aggtacacca gagcttacat atgtttgagt tagactctta aaatcctttg ccaaaataag
1921 ggatggtcaa atatatgaaa catgtcttta gaaaatttag gagataaatt tatttttaaa
1981 ttttgaaaca caaaacaatt ttgaatcttg ctctcttaaa gaaagcatct tgtatattaa
2041 aaatcaaaag atgaggcttt cttacatata catcttagtt gattattaaa aaaggaaaaa
2101 tatggtttcc agagaaaagg ccaataccta agcatttttt ccatgagaag cactgcatac
2161 ttacctatgt ggactataat aacctgtctc caaaaccatg ccataataat ataagtgctt
2221 tagaaattaa atcattgtgt tttttatgca ttttgctgag gcatgcttat tcatttaaca
2281 cctatctcaa aaacttactt agaaggtttt ttattatagt cctacaaaag acaatgtata
2341 agctgtaaca gaattttgaa ttgtttttct ttgcaaaacc cctccacaaa agcaaatcct
2401 ttcaagaatg gcatgggcat tctgtatgaa cctttccaga tggtgttcag tgaaagatgt
2461 gggtagttga gaacttaaaa agtgaacatt gaaacatcga cgtaactgga aattaggtgg
2521 gatatttgat aggatccata tctaataatg gattcgaact ctccaaacta cgccaattaa
2581 tttaatgtat cttgcttttg tgttcccgtc tttttgaaat atagacatgg atttataatg
2641 gcattttata tttggcaggc catcatagat tatttacaac ctaaaagctt ttgtgtatca
2701 aaaaaatcac attttattaa tgtaaatttc taatcgtata cttgctcact gttctgattt
2761 cctgtttctg aaccaagtaa aatcagtcct agaggctatg gttcttaatc tatggagctt
2821 gctttaagaa gccagttgtc aattgtggta acacaagttt ggccctgctg tcctactgtt
2881 taatagaaaa ctgttttaca ttggttaatg gtatttagag taattttttc tctctgcctc
2941 ctttgtgtct gttttaaagg agactaactc caggagtagg aaatgattca tcatcctcca
3001 aagcaagagg cttaagagag aaacaccgaa attcagatag ctcagggact gctaacagag
3061 aactacattt ttcttattgc cttgaaagtt aaaaggaaag cagatttctt cagtgacttt
3121 gtggtcctac taactacaac cagtttgggt gacagggctg gtaaagtccc agtgttagat
3181 gagtgaccta aatatactta gatttctaag tatggtgctc tcaggtccaa gttcaactat
3241 tcttaagcag tgcaattctt cccagttatt tgagatgaaa gatctctgct tattgaagat
3301 gtaccttcta aaactttcct aaaagtgtct gatgttttta ctcaagaggg gagtggtaaa
3361 attaaatact ctattgttca attctctaaa atcccagaac acaatcagaa atagctcagg
3421 cagacactaa taattaagaa cgctcttcct cttcataact gctttgcaag tttcctgtga
3481 aaacatcagt ttcctgtacc aaagtcaaaa tgaacgttac atcactctaa cctgaacagc
3541 tcacaatgta gctgtaaata taaaaaatga gagtgttcta cccagttttc aataaacctt
3601 ccaggctgca ataaccagca aggttttcag ttaaagccct atctgcactt tttatttatt
3661 agctgaaatg taagcaggca tattcactca cttttctttg cctttcctga gagttttatt
3721 aaaacttctc ccttggttac ctgttatctt ttgcacttct aacatgtagc caataaatct
3781 atttgatagc catcaaagga ataaaaagct ggccgtacaa attacatttc aaaacaaacc
3841 ctaataaatc cacatttccg catggctcat tcacctggaa taatgccttt tattgaatat
3901 gttcttatag ggcaaaacac tttcataagt agagtttttt atgttttttg tcatatcggt
3961 aacatgcagc tttttcctct catagcattt tctatagcga atgtaatatg cctcttatct
4021 tcatgaaaaa taaatattgc ttttgaacga aaaaaaaaaa aaaaa
//