LOCUS BC030621 3051 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens zinc finger, FYVE domain containing 27, mRNA (cDNA
clone MGC:33516 IMAGE:4818199), complete cds.
ACCESSION BC030621
VERSION BC030621.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3051)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3051)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030621.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50557647.
FEATURES Location/Qualifiers
source 1..3051
/db_xref="H-InvDB:HIT000041075"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33516 IMAGE:4818199"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3051
/gene="ZFYVE27"
/gene_synonym="RP11-459F3.2"
/db_xref="GeneID:118813"
/db_xref="HGNC:HGNC:26559"
/db_xref="MIM:610243"
CDS 200..1435
/gene="ZFYVE27"
/gene_synonym="RP11-459F3.2"
/codon_start=1
/product="zinc finger, FYVE domain containing 27"
/protein_id="AAH30621.2"
/db_xref="GeneID:118813"
/db_xref="HGNC:HGNC:26559"
/db_xref="MIM:610243"
/translation="MQTSEREGSGPELSPSVMPEAPLESPPFPTKSPAFDLFNLVLSY
KRLEINLEPLKDAGDGVRYLLRWQMPLCSLLTCLGLNVLFLTLNEGAWYSVGALMISV
PALLGYLQEVCRARLPDSELMRRKYHSVRQEDLQRVRLSRPEAVAEVKSFLIQLEAFL
SRLCCTCEAAYRVLHWENPVVSSQFYGALLGTVCMLYLLPLCWVLTLLNSTLFLGNVE
FFRVVSEYRASLQQRMNPKQEEHAFESPPPPDVGGKDGLMDSTPALTPTEDLTPGSVE
EAEEAEPDEEFKDAIEETHLVVLEDDEGAPCPAEDELALQDNGFLSKNEVLRSKVSRL
TERLRKRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAP
EAQRETVFVCASCNQTLSK"
BASE COUNT 611 a 842 c 934 g 664 t
ORIGIN
1 gatttgcgtc ccggaagcgg cggtggcggc cgcggcgtag gcggaggaga ttttcggacc
61 tgcgacttcc gaacaaccct ggcaggagga gcggcgttca gccgggggag gcctgaagaa
121 acgctccggg gcccagtggc tctacccctg ctcctgcccg accctgccgc ctccctcacg
181 gagccagcgg ccgggtagga tgcagacatc agaacgtgag gggagtgggc cggagctgag
241 ccccagcgtg atgcccgagg ctcccctgga gtctccacct tttcctacca agtccccagc
301 gtttgacctt ttcaacttgg ttctctccta caagaggctg gagatcaacc tggaaccctt
361 gaaggatgca ggtgatggtg ttcgatactt gctcaggtgg cagatgcctt tgtgttcctt
421 gctgacctgc ctgggcctca acgtcttgtt cctcactttg aatgagggtg catggtactc
481 agtaggtgcc ctgatgattt cagtgcccgc cctgctgggc taccttcagg aggtttgccg
541 ggcacggctg cctgattccg agctgatgcg gaggaagtat catagcgtga ggcaggagga
601 cctgcagaga gttcgcctgt ctcgtcccga ggccgtggct gaggtgaaga gcttcttgat
661 ccagctggag gccttcctga gccgcctgtg ctgcacatgt gaagccgcct accgcgtgct
721 gcactgggag aaccccgtcg tgtcctcaca gttctatggg gctcttctgg gcacagtctg
781 catgctgtat ttgctgccac tctgctgggt tctcaccctt ttaaacagca cgctctttct
841 ggggaatgtg gagttcttcc gagttgtgtc tgagtacagg gcatctctgc agcagaggat
901 gaacccaaag caggaagagc atgcctttga gagtcctcca ccaccagatg ttggggggaa
961 ggatggtctg atggacagca cgcctgccct cacacccacg gaggacctca caccgggcag
1021 cgtggaggag gctgaggagg ctgagccaga tgaagagttt aaagatgcga ttgaggagac
1081 ccacttggtg gtgctggagg atgatgaggg cgccccgtgc ccagcagagg atgagctggc
1141 cctgcaggac aacgggttcc tgagcaagaa tgaggtgctg cgcagcaagg tgtctcggct
1201 cacggagcgg ctccgcaagc gctaccccac caacaacttc gggaactgca cgggctgctc
1261 ggccaccttc tcagtgctga agaagaggcg gagctgcagt aattgtggaa acagcttctg
1321 ctctcgatgc tgctccttca aggtgcccaa gtcatccatg ggggccacag cccctgaagc
1381 ccagagggag actgtgtttg tgtgtgcctc gtgtaaccag accttgagca agtgagaaga
1441 gaggccaggg tccaaccagg cacccgtcct tggggccagc agtagacccc ccactctccc
1501 cacccctggc ccactgtggt gtgtgctggg caaatgtggc ctgaatgcta ggtaggcttc
1561 cccttccttc ctcactctct ccagctggat tctggagctg ttctccatcc atgagagtgg
1621 ctggcaatgg ctgctctcaa tcccttgagg gagaagagcc cctggagggc ctggcatgtt
1681 tgccctgctc tgcctgggac tgagcgagtg gacttagggc tgggcaggca gtagccacca
1741 gagggcagca gcgaactagg ccaggcctga ctggggtctg aagatcaggg tcagtgtggc
1801 tatgcctggg aattccagac ctgaggttgg gaaaagaggt ttttctcctg cagggtactg
1861 ggccaggccc tcagcctcag agagcctgca gaagggcttg ggagtgccac accccatctc
1921 tgctgattga atgtccctcc aggcaccagg atctcatcat ttccccatca gagggtgtgg
1981 ccaggcctaa caagaccatg ggtgcttcta gaaacagggt tgaagttccc agattccctg
2041 agaggagaat gtgtatagga gggtttggct gagtccttca gcgttaagtg gaggaaagct
2101 tggggaagcc ccaatagctg gacagacctc agcctcccct cgaagacacc tcaattcaca
2161 gactctcagc ccacacaatg ccccagtgtc cccagctccg ctggagcagc tgcagggcac
2221 ttggatcaca acttctgcac cctctgtcca gagtctaggg cagtcctcca ctggcccagc
2281 actccagttt cctttccctg cctcttgtcc aatggagtgg gaggccaggt gagtggagca
2341 gaggtcctga agcccttgac ccctgggggc ctgggtagtg taggatctcg ctgggctggg
2401 tcctggattc cagggctatt ccctggagga cagtctcagt tatgggataa ggccccctgg
2461 gggtctccat ttctttccaa cagtttcatg ttcactactg gactcttacg ggctcagtat
2521 ctctccctta gccatgagct ggctcaggca tcccttccct tccctggagc tgccctgcct
2581 ttctcaagta tttatttatt tattgcatgg ttcctgggaa catgtggcac aagtaatggg
2641 atgaggagga attgggggtg ggggtcttct acctaggact cttccctgga gtcatgggct
2701 gcctgggacc caggacccat gagggggctg agaggtttct acactcgagg agcaggggtc
2761 cagagaggca ggctggggag gcaagggacc catcctaggc ccgctttctt gccgagccaa
2821 gcagcttagc tggggctgtg cagccagggg cttacccagg ccagtggagg tgccacagcc
2881 ctggggagcc agacaggctt tggtatcgta tcgcctctgt gtccttttaa gagaggagag
2941 ttcagtaccc cgtgctttct ttacactgga gaggaactaa aaggatctct gtgtctatgg
3001 agaattgtca ataaaaaggc ctcaagcttc aaaagaaaaa aaaaaaaaaa a
//