LOCUS BC030608 3020 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens podocan, mRNA (cDNA clone MGC:26993 IMAGE:4826932),
complete cds.
ACCESSION BC030608
VERSION BC030608.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3020)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3020)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC030608.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45505136.
FEATURES Location/Qualifiers
source 1..3020
/db_xref="H-InvDB:HIT000092169"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26993 IMAGE:4826932"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3020
/gene="PODN"
/gene_synonym="PCAN"
/gene_synonym="SLRR5A"
/db_xref="GeneID:127435"
/db_xref="HGNC:HGNC:23174"
/db_xref="MIM:608661"
CDS 10..1995
/gene="PODN"
/gene_synonym="PCAN"
/gene_synonym="SLRR5A"
/codon_start=1
/product="podocan"
/protein_id="AAH30608.1"
/db_xref="GeneID:127435"
/db_xref="HGNC:HGNC:23174"
/db_xref="MIM:608661"
/translation="MEGARARGAQLRLGERVRPVGRRSAPGRSRFHQPWRPGASDSAP
PAGTMAQSRVLLLLLLLPPQLHLGPVLAVRAPGFGRSGGHSLSPEENEFAEEEPVLVL
SPEEPGPGPAAVSCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIY
PEELSRLHRLETLNLQNNRLTSRGLPEKAFEHLTNLNYLYLANNKLTLAPRFLPNALI
SVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSSNVEVLILSSNF
LRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSSLRELYLQNNYLTDEGLDNETFWK
LSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDANVLTPIRSLEYLLLHSNQ
LREQGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGREDFAT
TYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLSGNRLHTLPPGLPRNVHVLKVKR
NELAALARGALAGMAQLRELYLTSNRLRSRALGPRAWVDLAHLQLLDIAGNQLTEIPE
GLPESLEYLYLQNNKISAVPANAFDSTPNLKGIFLRFNKLAVGSVVDSAFRRLKHLQV
LDIEGNLEFGDISKDRGRLGKEKEEEEEEEEEEEETR"
BASE COUNT 657 a 988 c 834 g 541 t
ORIGIN
1 tggacttgaa tggaaggagc ccgagcccgc ggagcgcagc tgagactggg ggagcgcgtt
61 cggcctgtgg ggcgccgctc ggcgccgggg cgcagcaggt tccatcagcc ctggcgccca
121 ggcgcatctg actcggcacc ccctgcaggc accatggccc agagccgggt gctgctgctc
181 ctgctgctgc tgccgccaca gctgcacctg ggacctgtgc ttgccgtgag ggccccagga
241 tttggccgaa gtggcggcca cagcctgagc cccgaagaga acgaatttgc ggaggaggag
301 ccggtgctgg tactgagccc tgaggagccc gggcctggcc cagccgcggt cagctgcccc
361 cgagactgtg cctgttccca ggagggcgtc gtggactgtg gcggtattga cctgcgtgag
421 ttcccggggg acctgcctga gcacaccaac cacctatctc tgcagaacaa ccagctggaa
481 aagatctacc ctgaggagct ctcccggctg caccggctgg agacactgaa cctgcaaaac
541 aaccgcctga cttcccgagg gctcccagag aaggcgtttg agcatctgac caacctcaat
601 tacctgtact tggccaataa caagctgacc ttggcacccc gcttcctgcc aaacgccctg
661 atcagtgtgg actttgctgc caactatctc accaagatct atgggctcac ctttggccag
721 aagccaaact tgaggtctgt gtacctgcac aacaacaagc tggcagacgc cgggctgccg
781 gacaacatgt tcaacggctc cagcaacgtc gaggtcctca tcctgtccag caacttcctg
841 cgccacgtgc ccaagcacct gccgcctgcc ctgtacaagc tgcacctcaa gaacaacaag
901 ctggagaaga tccccccggg ggccttcagc gagctgagca gcctgcgcga gctatacctg
961 cagaacaact acctgactga cgagggcctg gacaacgaga ccttctggaa gctctccagc
1021 ctggagtacc tggatctgtc cagcaacaac ctgtctcggg tcccagctgg gctgccgcgc
1081 agcctggtgc tgctgcactt ggagaagaac gccatccgga gcgtggacgc gaatgtgctg
1141 acccccatcc gcagcctgga gtacctgctg ctgcacagca accagctgcg ggagcagggc
1201 atccacccac tggccttcca gggcctcaag cggttgcaca cggtgcacct gtacaacaac
1261 gcgctggagc gcgtgcccag tggcctgcct cgccgcgtgc gcaccctcat gatcctgcac
1321 aaccagatca caggcattgg ccgcgaagac tttgccacca cctacttcct ggaggagctc
1381 aacctcagct acaaccgcat caccagccca caggtgcacc gcgacgcctt ccgcaagctg
1441 cgcctgctgc gctcgctgga cctgtcgggc aaccggctgc acacgctgcc acctgggctg
1501 cctcgaaatg tccatgtgct gaaggtcaag cgcaatgagc tggctgcctt ggcacgaggg
1561 gcgctggcgg gcatggctca gctgcgtgag ctgtacctca ccagcaaccg actgcgcagc
1621 cgagccctgg gcccccgtgc ctgggtggac ctcgcccatc tgcagctgct ggacatcgcc
1681 gggaatcagc tcacagagat ccccgagggg ctccccgagt cacttgagta cctgtacctg
1741 cagaacaaca agattagtgc ggtgcccgcc aatgccttcg actccacgcc caacctcaag
1801 gggatctttc tcaggtttaa caagctggct gtgggctccg tggtggacag tgccttccgg
1861 aggctgaagc acctgcaggt cttggacatt gaaggcaact tagagtttgg tgacatttcc
1921 aaggaccgtg gccgcttggg gaaggaaaag gaggaggagg aagaggagga ggaggaggaa
1981 gaggaaacaa gatagtgaca aggtgatgca gatgtgacct aggatgatgg accgccggac
2041 tcttttctgc agcacacgcc tgtgtgctgt gagcccccca ctctgccgtg ctcacacaga
2101 cacacccagc tgcacacatg aggcatccca catgacacgg gctgacacag tctcatatcc
2161 ccaccccttc ccacggcgtg tcccacggcc agacacatgc acacacatca caccctcaaa
2221 cacccagctc agccacacac aactaccctc caaaccacca cagtctctgt cacaccccca
2281 ctaccgctgc cacgccctct gaatcatgca gggaagggtc tgcccctgcc ctggcacgca
2341 caggcaccca ttccctcccc ctgctgacat gtgtatgcgt atgcatacac accacacaca
2401 cacacatgca caagtcatgt gcgaacagcc ctccaaagcc tatgccacag acagctcttg
2461 ccccagccag aatcagccat agcagctcgc cgtctgccct gtccatctgt ccgtccgttc
2521 cctggagaag acacaagggt atccatgctc tgtggccagg tgcctgccac cctctggaac
2581 tcacaaaagc tggcttttat tcctttccca tcctatgggg acaggagcct tcaggactgc
2641 tggcctggcc tggcccaccc tgctcctcca ggtgctgggc agtcactctg ctaagagtcc
2701 ctccctgcca cgccctggca ggacacaggc acttttccaa tgggcaagcc cagtggaggc
2761 aggatgggag agccccctgg gtgctgctgg ggccttgggg caggagtgaa gcagaggtga
2821 tggggctggg ctgagccagg gaggaaggac ccagctgcac ctaggagaca cctttgttct
2881 tcaggcctgt gggggaagtt ccgggtgcct ttatttttta ttcttttcta aggaaaaaaa
2941 tgataaaaat ctcaaagctg atttttcttg ttatagaaaa actaatataa aagcattatc
3001 cccaaaaaaa aaaaaaaaaa
//