LOCUS BC030574 3043 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens U2 small nuclear RNA auxiliary factor 2, mRNA (cDNA
clone MGC:16243 IMAGE:3687471), complete cds.
ACCESSION BC030574
VERSION BC030574.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3043)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3043)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC030574.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: m Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 60279266.
FEATURES Location/Qualifiers
source 1..3043
/db_xref="H-InvDB:HIT000092158"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16243 IMAGE:3687471"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3043
/gene="U2AF2"
/gene_synonym="U2AF65"
/db_xref="GeneID:11338"
/db_xref="HGNC:HGNC:23156"
/db_xref="MIM:191318"
CDS 960..2375
/gene="U2AF2"
/gene_synonym="U2AF65"
/codon_start=1
/product="U2 small nuclear RNA auxiliary factor 2"
/protein_id="AAH30574.1"
/db_xref="GeneID:11338"
/db_xref="HGNC:HGNC:23156"
/db_xref="MIM:191318"
/translation="MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR
DRRNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHI
TPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGI
TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGII
FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVK
ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR
ASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYE
EIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF
ANRVVVTKYCDPDSYHRRDFW"
BASE COUNT 642 a 892 c 953 g 556 t
ORIGIN
1 gcaacctccg cagcggtcgc gcgcaccctt cacccctctt gctgcttttg tctggcacaa
61 ccttctcagg ccctccgcga ggccggccct ttttttcttt cactttcccc acccggagag
121 ccaggtgccg agaactagga cctcgtcccc ttctctatcc cttcccctga tccatctcgt
181 ctctgttctc cttccctttt ccgttcccga agccggaagg agccgaggta cccacggaaa
241 aagtcgaagc tgtccccgga gagtgaggcc ttcacgaagc ggtggcggaa ggagccgaag
301 ttctctgatc ggaggcgtga gcaagtggca tctccggaaa gagccgaaac acggactcga
361 gcttaatccc aggaggggcc cgagggcgag atccggaaat ctccggaaag agccgaaggc
421 cgggacggtt aggattgtcg gaagtggccg attgcttgga cagggccggc ggagaagatc
481 ggagcaagtc cgtggaagaa gccaaagact gggacggatt gaattgttgg aagaacccga
541 actcgcagag gggactgggc gcagtggcac acgaggacac acggaaacct ccgaacgttg
601 aggagataat ctcggaaaag ttacggaaac ctgggaagtc ggcgaaaccc tacgttcggg
661 tgttttcgga agcagccgaa gcggccgcct gcttcgcctt cgtccagtat ccggagatag
721 ccgaggcgct tcggagccag gctcgggggg aggggcaagc tcgcgggcgg gcgggcgggt
781 gagggggcgg agcccgggcg gggcggggag ggctgccgga ggcttgatta ggtaggaggt
841 ggcgaagcgc cggcggcggc cggaagtagc cgaagccagc ggcggaagta gccgaagcgg
901 ctggagcggg cggcaaggcg aggcgaaagc tgcacagggc cctacgcggc cgcctcagca
961 tgtcggactt cgacgagttc gagcggcagc tcaacgagaa taaacaagag cgggacaagg
1021 agaaccggca tcggaagcgc agccacagcc gctctcggag ccgggaccgc aaacgccgga
1081 gccggagccg cgaccggcgc aaccgggacc agcggagcgc ctcccgggac aggcgacgac
1141 gcagcaaacc tttgaccaga ggcgctaaag aggagcacgg tggactgatt cgttcccccc
1201 gccacgagaa gaagaagaag gtccgtaaat actgggacgt gccaccccca ggctttgagc
1261 acatcacccc aatgcagtac aaggccatgc aagctgcggg tcagattcca gccactgctc
1321 ttctccccac catgacccct gacggtctgg ctgtgacccc aacgccggtg cccgtggtcg
1381 ggagccagat gaccagacaa gcccggcgcc tctacgtggg caacatcccc tttggcatca
1441 ctgaggaggc catgatggat ttcttcaacg cccagatgcg cctggggggg ctgacccagg
1501 cccctggcaa cccagtgttg gctgtgcaga ttaaccagga caagaatttt gcctttttgg
1561 agttccgctc agtggacgag actacccagg ctatggcctt tgatggcatc atcttccagg
1621 gccagtcact aaagatccgc aggcctcacg actaccagcc gcttcctggc atgtcagaga
1681 acccctccgt ctatgtgcct ggggttgtgt ccactgtggt ccccgactct gcccacaagc
1741 tgttcatcgg gggcttaccc aactacctga acgatgacca ggtcaaagag ctgctgacat
1801 cctttgggcc cctcaaggcc ttcaacctgg tcaaggacag tgccacgggg ctctccaagg
1861 gctacgcctt ctgtgagtac gtggacatca acgtcacgga tcaggccatt gcggggctga
1921 acggcatgca gctgggggat aagaagctgc tggtccagag ggcgagtgtg ggagccaaga
1981 atgccacgct gagcaccatc aatcagacgc ctgtgaccct gcaagtgccg ggcttgatga
2041 gctcccaggt gcagatgggc ggccacccga ctgaggtcct gtgcctcatg aacatggtgc
2101 tgcctgagga gctgctggac gacgaggagt atgaggagat cgtggaggat gtgcgggacg
2161 agtgcagcaa gtacgggctt gtcaagtcca tcgagatccc ccggcctgtg gacggcgtcg
2221 aggtgcccgg ctgcggaaag atctttgtgg agttcacctc tgtgtttgac tgccagaaag
2281 ccatgcaggg cctgacgggc cgcaagttcg ccaacagagt ggttgtcaca aaatactgtg
2341 accccgactc ttatcaccgc cgggacttct ggtagaggcg gctgggggag ggtgggggca
2401 gggctggctg ggggcttctc cccactcccg cccccccctt atccccctct gaagacgatg
2461 ggcagaggag tgacagccgc agacacacga cagccggcag caactggaat ggcagcaatt
2521 aagggtgggg ggcgggggtt ggggggttgg ggggttaggg cagggatggg actggggaag
2581 tgcgcacaca gcccacacag acaacacgca cccacacaga cacagaggga aggggttggg
2641 atggggacag ggtgcacagc agggcggggt aggaccccag cccctcccaa aacagcctct
2701 ccttctccca tagacccctt tcttctcccc ttccccacgg taggaacata gcgtgtttat
2761 attttatggc caaactattt tgaattttgt tgtccggccc tcagtgccct gccctctccc
2821 ttaccaggac cacagctctg ttccttcggc ctctggtcct ctctggtccc ctcctgggtt
2881 tcttacgtag ttgatttttc ctctttagtc tcccccgacc tgcgcccagc cccgtggccc
2941 ctgcccctct cctactctct gtggcagttt catatttgct aagacgaatt tgctcattaa
3001 acattttgtt gtattttact ttaaaaaaaa aaaaaaaaaa aaa
//