LOCUS BC030225 1847 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens sorting nexin 22, mRNA (cDNA clone IMAGE:5223230),
complete cds.
ACCESSION BC030225
VERSION BC030225.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1847)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1847)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: l Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376169
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1847
/db_xref="H-InvDB:HIT000092088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5223230"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1847
/gene="SNX22"
/db_xref="GeneID:79856"
/db_xref="HGNC:HGNC:16315"
CDS 1214..1414
/gene="SNX22"
/codon_start=1
/product="SNX22 protein"
/protein_id="AAH30225.2"
/db_xref="GeneID:79856"
/db_xref="HGNC:HGNC:16315"
/translation="MGLQGWVVGFAFLGSWDPQTASPSCCPPLEPLPPAPVPWSLLCR
HKENKFGFPGLHFFSSLTSLPS"
BASE COUNT 341 a 581 c 599 g 326 t
ORIGIN
1 gagcgcgcgg agcagctggg gccggggcgc ggatgctgga agttcacatc ccgtcggtgg
61 ggcccgaggc cgaggggccc aggcagagcc cggagaaaag ccacatggtg agcgcggccc
121 ctggatgggg aggggcgccg ggacccgcag gatttccccg cgctgcgctc agtggggacc
181 cggggcccgg gcctgggtga acgagcgctg cgggctggac cgtcggggga aaccttgtcg
241 agggtttggg ggccgcttgg atttgccagc ctcgcggacc atggttcgag ctcttgaggg
301 accccagggc tccgaggggc aggtccgcca gccggttctc ccaggtgtgc gggagcggag
361 agtccccggg cagccgcggc gccgcaaggc cgctttgtgc ctttgagagc gggagggtgg
421 gcacgtcgcc aggcgcaggt gctgcggcgt cctcccgcgg ggcctcacgc gcagacccgc
481 tgcccgcccg cgccgccagg tgttccgagt ggaggtgctg tgcagcgggc gcagacacac
541 ggtgccaagg cgctacagcg agttccacgc gctgcacaag cgggtgaggc ggcgccgacc
601 tcccaccggc cccggcccag cctctgtcca gcccccgccc aggccctgtg aggcgggcgg
661 gcgagcccca gcctccgcca cccccattac tgcctcagtc cctgcgcagc cggtcagccc
721 ccgggcctct gtgggtgggt tggggccttc ctcgccctcg gccggtccac cactcaccag
781 ggtctgtccc agtagagccc gaaggcgggg gcgcgggagg gcttctggct ggggcgaaga
841 gggcttgagg gctcagtcgg gatgctgtga tcgcacgcgg taaacctcca gtagatcaag
901 aagctgtaca aagtgcccga cttcccctcg atacgcctgc ccaactggag gaccagaggg
961 ttggaacagc gccggcaggg cttggaggct tacatccagg gcatcctgta cctgaaccag
1021 gaggtgccca aggagttact ggaattcctg agacttcggc acttccccac agaccccaag
1081 gctagcaact ggggcaccct gagggagttc ctgcctggcg acagcagctc ccagcagcac
1141 cagcggcctg tcctgagctt ccatgtggat ccctatgttt gcaacccctc cccaggtgag
1201 gaggtgccta gatatggggc tacagggctg ggttgtgggc tttgcatttc tcggctcctg
1261 ggaccctcag acagcatctc cttcctgctg cccacctctg gagccactac ctcctgctcc
1321 tgtcccctgg agcctgcttt gtagacacaa ggaaaacaag tttggcttcc ctggtctcca
1381 tttcttcagc agcctgactt ctttaccaag ctgatgtgaa aagaatgtga cctgggaatg
1441 cggaggcttc atttggggtg gacagctgct gtctgctgcc ttggcagggg ctcctactcc
1501 caagtggggg ctgagcccat gagcaggagc tcaaggagct gcaggtctga ggccagacct
1561 gtttaattct atcccacaga gtcgctgccc aacgtggtgg tgaatggtgt gctccagggc
1621 ctctacagct tcagcatcag cccagataaa gcccagccaa aggcggcctg tcaccctgct
1681 cctctgccac cgatgccctg atcagtccag aggcctttgg ctgcctccta agaaagtcat
1741 gtgcctctgt cctatgaact ccatataagg ctgggtcctc ctttggcctg gacccaggac
1801 ttaattaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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