LOCUS BC030155 1710 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens tumor necrosis factor receptor superfamily, member
11b, mRNA (cDNA clone MGC:29565 IMAGE:4875170), complete cds.
ACCESSION BC030155
VERSION BC030155.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1710)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1710)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC030155.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: i Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22547122.
FEATURES Location/Qualifiers
source 1..1710
/db_xref="H-InvDB:HIT000040967"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29565 IMAGE:4875170"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1710
/gene="TNFRSF11B"
/gene_synonym="OCIF"
/gene_synonym="TR1"
/db_xref="GeneID:4982"
/db_xref="HGNC:HGNC:11909"
/db_xref="MIM:602643"
CDS 222..1427
/gene="TNFRSF11B"
/gene_synonym="OCIF"
/gene_synonym="TR1"
/codon_start=1
/product="tumor necrosis factor receptor superfamily,
member 11b"
/protein_id="AAH30155.1"
/db_xref="GeneID:4982"
/db_xref="HGNC:HGNC:11909"
/db_xref="MIM:602643"
/translation="MNNLLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKC
PPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHN
RVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPC
RKHTNCSVFGLLLTQKGNATHDNICSGNSESTQKCGIDVTLCEEAFFRFAVPTKFTPN
WLSVLVDNLPGTKVNAESVERIKRQHSSQEQTFQLLKLWKHQNKDQDIVKKIIQDIDL
CENSVQRHIGHANLTFEQLRSLMESLPGKKVGAEDIEKTIKACKPSDQILKLLSLWRI
KNGDQDTLKGLMHALKHSKTYHFPKTVTQSLKKTIRFLHSFTMYKLYQKLFLEMIGNQ
VQSVKISCL"
BASE COUNT 535 a 412 c 379 g 384 t
ORIGIN
1 ctggagcttt ctgcacaccc cccgaccgct cccgcccaag cttcctaaaa aagaaaggtg
61 caaagtttgg tccaggatag aaaaatgact gatcaaaggc aggcgatact tcctgttgcc
121 gggacgctat atataacgtg atgagcgcac gggctgcgga gacgcaccgg agcgctcgcc
181 cagccgccgc ctccaagccc ctgaggtttc cggggaccac aatgaacaac ttgctgtgct
241 gcgcgctcgt gtttctggac atctccatta agtggaccac ccaggaaacg tttcctccaa
301 agtaccttca ttatgacgaa gaaacctctc atcagctgtt gtgtgacaaa tgtcctcctg
361 gtacctacct aaaacaacac tgtacagcaa agtggaagac cgtgtgcgcc ccttgccctg
421 accactacta cacagacagc tggcacacca gtgacgagtg tctatactgc agccccgtgt
481 gcaaggagct gcagtacgtc aagcaggagt gcaatcgcac ccacaaccgc gtgtgcgaat
541 gcaaggaagg gcgctacctt gagatagagt tctgcttgaa acataggagc tgccctcctg
601 gatttggagt ggtgcaagct ggaaccccag agcgaaatac agtttgcaaa agatgtccag
661 atgggttctt ctcaaatgag acgtcatcta aagcaccctg tagaaaacac acaaattgca
721 gtgtctttgg tctcctgcta actcagaaag gaaatgcaac acacgacaac atatgttccg
781 gaaacagtga atcaactcaa aaatgtggaa tagatgttac cctgtgtgag gaggcattct
841 tcaggtttgc tgttcctaca aagtttacgc ctaactggct tagtgtcttg gtagacaatt
901 tgcctggcac caaagtaaac gcagagagtg tagagaggat aaaacggcaa cacagctcac
961 aagaacagac tttccagctg ctgaagttat ggaaacatca aaacaaagac caagatatag
1021 tcaagaagat catccaagat attgacctct gtgaaaacag cgtgcagcgg cacattggac
1081 atgctaacct caccttcgag cagcttcgta gcttgatgga aagcttaccg ggaaagaaag
1141 tgggagcaga agacattgaa aaaacaataa aggcatgcaa acccagtgac cagatcctga
1201 agctgctcag tttgtggcga ataaaaaatg gcgaccaaga caccttgaag ggcctaatgc
1261 acgcactaaa gcactcaaag acgtaccact ttcccaaaac tgtcactcag agtctaaaga
1321 agaccatcag gttccttcac agcttcacaa tgtacaaatt gtatcagaag ttatttttag
1381 aaatgatagg taaccaggtc caatcagtaa aaataagctg cttataactg gaaatggcca
1441 ttgagctgtt tcctcacaat tggcgagatc ccatggatga gtaaactgtt tctcaggcac
1501 ttgaggcttt cagtgatatc tttctcatta ccagtgacta attttgccac agggtactaa
1561 aagaaactat gatgtggaga aaggactaac atctcctcca ataaacccca aatggttaat
1621 ccaactgtca gatctggatc gttatctact gactatattt tcccttatta ctgcttgcag
1681 taattcaact ggaaaaaaaa aaaaaaaaaa
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