LOCUS BC030143 2768 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens mucosa associated lymphoid tissue lymphoma
translocation gene 1, mRNA (cDNA clone MGC:20650 IMAGE:4765195),
complete cds.
ACCESSION BC030143
VERSION BC030143.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2768)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2768)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC030143.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27886565.
FEATURES Location/Qualifiers
source 1..2768
/db_xref="H-InvDB:HIT000040961"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20650 IMAGE:4765195"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2768
/gene="MALT1"
/gene_synonym="DKFZp434L132"
/gene_synonym="MLT1"
/db_xref="GeneID:10892"
/db_xref="HGNC:HGNC:6819"
/db_xref="MIM:604860"
CDS 113..2554
/gene="MALT1"
/gene_synonym="DKFZp434L132"
/gene_synonym="MLT1"
/codon_start=1
/product="mucosa associated lymphoid tissue lymphoma
translocation gene 1"
/protein_id="AAH30143.1"
/db_xref="GeneID:10892"
/db_xref="HGNC:HGNC:6819"
/db_xref="MIM:604860"
/translation="MSLLGDPLQALPPSAAPTGPLLAPPAGATLNRLREPLLRRLSEL
LDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCT
VTELSDFLQAMEHTEVLQLLSPPGIKITVNPESKAVLAGQFVKLCCRATGHPFVQYQW
FKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRS
VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM
VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQPLAKDKVA
LLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLD
KGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQEKETGLNVFLL
DMCRKRNDYDDTIPILDALKVTANIVFGYATCQGAEAFEIQHSGLANGIFMKFLKDRL
LEDKKITVLLDEVAEDMGKCHLTKGKQALEIRSSLSEKRALTDPIQGTEYSAESLVRN
LQWAKAHELPESMCLKFDCGVQIQLGFAAEFSNVMIIYTSIVYKPPEIIMCDAYVTDF
PLDLDIDPKDANKGTPEETGSYLVSKDLPKHCLYTRLSSLQKLKEHLVFTVCLSYQYS
GLEDTVEDKQEVNVGKPLIAKLDMHRGLGRKTCFQTCLMSNGPYQSSAATSGGAGHYH
SLQDPFHGVYHSHPGNPSNVTPADSCHCSRTPDAFISSFAHHASCHFSRSNVPVETTD
EIPFSFSDRLRISEK"
BASE COUNT 806 a 564 c 659 g 739 t
ORIGIN
1 gttcttccgc ccctgcctcc gcggctcgga ggcgagcgga aggtgccccg gggccgaggc
61 ccgtgacggg gcgggcggga gccccggcag tccggggtcg ccggcgaggg ccatgtcgct
121 gttgggggac ccgctacagg ccctgccgcc ctcggccgcc cccacggggc cgctgctcgc
181 ccctccggcc ggcgcgaccc tcaaccgcct gcgggagccg ctgctgcgga ggctcagcga
241 gctcctggat caggcgcccg agggccgggg ctggaggaga ctggcggagc tggcggggag
301 tcgcgggcgc ctccgcctca gttgcctaga cctggagcag tgttctctta aggtactgga
361 gcctgaagga agccccagcc tgtgtctgct gaagttaatg ggtgaaaaag gttgcacagt
421 cacagaattg agtgatttcc tgcaggctat ggaacacact gaagttcttc agcttctcag
481 ccccccagga ataaagatta ctgtaaaccc agagtcaaag gcagtcttgg ctggacagtt
541 tgtgaaactg tgttgccggg caactggaca tccttttgtt caatatcagt ggttcaaaat
601 gaataaagag attccaaatg gaaatacatc agagcttatt tttaatgcag tgcatgtaaa
661 agatgcaggc ttttatgtct gtcgagttaa taacaatttc acctttgaat tcagccagtg
721 gtcacagctg gatgtttgcg acatcccaga gagcttccag agaagtgttg atggcgtctc
781 tgaatccaag ttgcaaatct gtgttgaacc aacttcccaa aagctgatgc caggcagcac
841 attggtttta cagtgtgttg ctgttggaag ccctattcct cactaccagt ggttcaaaaa
901 tgaattacca ttaacacatg agaccaaaaa gctatacatg gtgccttatg tggatttgga
961 acaccaagga acctactggt gtcatgtata taatgatcga gacagtcaag atagcaagaa
1021 ggtagaaatc atcatagatg aattaaataa tcttggtcat cctgataata aagagcaaac
1081 aactgaccag cctttggcga aggacaaggt tgcccttttg ataggaaata tgaattaccg
1141 ggagcacccc aagctcaaag ctcctttggt ggatgtgtac gaattgacta acttactgag
1201 acagctggac ttcaaagtgg tttcactgtt ggatcttact gaatatgaga tgcgtaatgc
1261 tgtggatgag tttttactcc ttttagacaa gggagtatat gggttattat attatgcagg
1321 acatggttat gaaaattttg ggaacagctt catggtcccc gttgatgctc caaatccata
1381 taggtctgaa aattgtctgt gtgtacaaaa tatactgaaa ttgatgcaag aaaaagaaac
1441 tggacttaat gtgttcttat tggatatgtg taggaaaaga aatgactacg atgataccat
1501 tccaatcttg gatgcactaa aagtcaccgc caatattgtg tttggatatg ccacgtgtca
1561 aggagcagaa gcttttgaaa tccagcattc tggattggca aatggaatct ttatgaaatt
1621 tttaaaagac agattattag aagataagaa aatcactgtg ttactggatg aagttgcaga
1681 agatatgggt aagtgtcacc ttaccaaagg caaacaggct ctagagattc gaagtagttt
1741 atctgagaag agagcactta ctgatccaat acagggaaca gaatattctg ctgaatctct
1801 tgtgcggaat ctacagtggg ccaaggctca tgaacttcca gaaagtatgt gtcttaagtt
1861 tgactgtggt gttcagattc aattaggatt tgcagctgag ttttccaatg tcatgatcat
1921 ctatacaagt atagtttaca aaccaccgga gataataatg tgtgatgcct acgttactga
1981 ttttccactt gatctagata ttgatccaaa agatgcaaat aaaggcacac ctgaagaaac
2041 tggcagctac ttggtatcaa aggatcttcc caagcattgc ctctatacca gactcagttc
2101 actgcaaaaa ttaaaggaac atctagtctt cacagtatgt ttatcatatc agtactcagg
2161 attggaagat actgtagagg acaagcagga agtgaatgtt gggaaacctc tcattgctaa
2221 attagacatg catcgaggtt tgggaaggaa gacttgcttt caaacttgtc ttatgtctaa
2281 tggtccttac cagagttctg cagccacctc aggaggagca gggcattatc actcattgca
2341 agacccattc catggtgttt accattcaca tcctggtaat ccaagtaatg ttacaccagc
2401 agatagctgt cattgcagcc ggactccaga tgcatttatt tcaagtttcg ctcaccatgc
2461 ttcatgtcat tttagtagaa gtaatgtgcc agtagagaca actgatgaaa taccatttag
2521 tttctctgac aggctcagaa tttctgaaaa atgacctcct tgtttttgaa agttagcata
2581 attttagatg cctgtgaaat agtactgcac ttacataaag tgagacattg tgaaaaggca
2641 aatttgtata tgtagagaaa gaatagtagt aactgtttca tagcaaactt caggactttg
2701 agatgttgaa attacattat ttaattacag acttcctctt tctaagaaaa aaaaaaaaaa
2761 aaaaaaaa
//