LOCUS BC029926 3058 bp mRNA linear HUM 13-JUN-2005
DEFINITION Homo sapiens synapse defective 1, Rho GTPase, homolog 1 (C.
elegans), mRNA (cDNA clone MGC:34690 IMAGE:5106728), complete cds.
ACCESSION BC029926
VERSION BC029926.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3058)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3058)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: f Column: 7.
FEATURES Location/Qualifiers
source 1..3058
/db_xref="H-InvDB:HIT000040926"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34690 IMAGE:5106728"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3058
/gene="SYDE1"
/gene_synonym="7h3"
/gene_synonym="FLJ13511"
/db_xref="GeneID:85360"
CDS 13..2019
/gene="SYDE1"
/gene_synonym="7h3"
/gene_synonym="FLJ13511"
/codon_start=1
/product="SYDE1 protein"
/protein_id="AAH29926.1"
/db_xref="GeneID:85360"
/translation="MAEPLLRKTFSRLRGREKLPRKKSDAKERGPGVPGTGEPAGEIW
YNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIK
MKKLPELRRRLSLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRA
GYLSDGDSPERPAGPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGAT
PRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRH
RPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLP
LLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVC
LSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGL
LSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARS
SGPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEV
VTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHVTGSDSEDEDEEVG
EPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL"
BASE COUNT 560 a 1030 c 928 g 540 t
ORIGIN
1 ccgggccgca gcatggccga gccgctactc aggaaaacct tctcccgcct gcggggccgg
61 gagaaacttc cccggaaaaa gtcggacgcc aaggagcgcg ggcctggggt acctggcact
121 ggggagcccg ccggcgagat ctggtacaac cccatccctg aggaagaccc cagacctcca
181 gcacctgagc ccccggggcc acagcctggc tcagctgagt cagagggcct ggccccccaa
241 ggtgcagccc ccgccagccc cccaaccaaa gcctcccgca ccaagtcccc gggccccgcc
301 aggcgcctct ccataaagat gaagaagctg ccggaactgc ggcgccgcct gagcctgcga
361 ggcccccggg ctggcaggga gcgcgagagg gctgcccctg cgggctccgt catcagccgc
421 taccacctgg acagcagcgt ggggggcccc gggccggcag cagggcctgg gggcacccgg
481 agcccgaggg ccggttacct cagcgacggg gactcaccgg agcgcccagc tgggccccca
541 tcacccacct ccttccggcc ctacgaggtg ggtcccgcag cccgggcacc cccggccgca
601 ctctggggcc gcctcagcct gcacctgtac ggtctcgggg ggctgcggcc agcgccgggg
661 gccaccccca gggacctctg ctgcctactg caagtggatg gggaggccag ggcccgaaca
721 gggccactgc gaggggggcc ggacttcctg cggctggacc acaccttcca cctggagctg
781 gaggccgcca ggctcctgcg cgccctggtg cttgcgtggg accctggcgt gagaaggcac
841 cggccctgtg cccagggcac cgtgctgctg cccacggtct tccgagggtg ccaggcccaa
901 cagctggccg tgcgcctgga gcctcagggg ctgctgtatg ccaagctgac cctgtcggag
961 cagcaggaag cccctgccac agctgagccc cgcgtctttg ggctgcccct gccactgctg
1021 gtggagcggg agcggccccc cggccaggtg cccctcatca tccagaagtg cgttgggcag
1081 atcgagcgcc gagggctgcg ggtagtggga ctgtaccgtc tttgtggctc agcggcagtg
1141 aagaaagagc ttcgggatgc ctttgagcgg gacagtgcag cggtctgcct atctgaggac
1201 ctgtaccccg atatcaatgt catcactggc atcctcaagg attatcttcg agagttgccc
1261 accccactca tcacccagcc cctgtataag gtggtactgg aggccatggc ccgggacccc
1321 ccaaacagag ttccccccac cactgagggc acccgagggc tcctcagctg cctgccagat
1381 gtggaaaggg ccacgctgac gcttctcctg gaccacctgc gcctcgtctc ctccttccat
1441 gcctacaacc gcatgacccc acagaacttg gccgtgtgct tcgggcctgt gctgctgccg
1501 gcacgccagg cgcccacaag gcctcgtgcc cgcagctccg gcccaggcct tgccagtgca
1561 gtggacttca agcaccacat cgaggtgctg cactacctgc tgcagtcttg gccagatccc
1621 cgcctgcccc gacaatctcc agatgtcgcg ccttacttgc gacccaaacg acagccacct
1681 ctgcacctgc cgctggcaga ccccgaagtg gtgactcggc cccgcggtcg aggaggcccc
1741 gaaagccccc cgagcaaccg ctacgccggc gactggagcg tttgcgggcg ggacttcctg
1801 ccctgtgggc gggatttcct gtccgggcca gactacgacc acgtgacggg cagtgacagc
1861 gaggacgagg acgaggaggt cggcgagccg agggtcaccg gtgacttcga agacgacttc
1921 gatgcgccct tcaacccgca cctgaatctc aaagacttcg acgccctcat cctggatctg
1981 gagagagagc tctccaagca aatcaacgtg tgcctctgag ccagatgacg gggtgggacc
2041 ccggttagta aggaccgggc gcccagtggc taaggcggtg ccctggtgac caaggagagc
2101 cagacctgtt gctcaggccg agctcctggt tgccagcgag ttaccacggg accagtcgcg
2161 tgtatggctg agactcattc ccagtttcca gggcccggta tttggacact agttgccaag
2221 tctggggcct ggggatttta gggaccagcg gttgtgacca tctttcctga gcaccaaggg
2281 cttccccttt tgttgccaaa aaggtagttc tcgcgcttgc taggctggcc tctcttgcct
2341 ccccttggcc ggggcaacac cagttactgt gagcatcacc ctggtgtggt gagtcacctc
2401 tagtcggccc tcttgctgct gccaaccaaa tcagtattag ctttgagcac tgcactgttt
2461 ctccctccct tggacgacac aaagactagc atgaggcact gtttgtgggg ggcagcccct
2521 atcctgggtt ccagcatgga cacaggggta gcctggggct tatagagaaa cagctggttt
2581 cccctaccct tttccgggga agaccccacg attggcctct agtcagcaaa tggagataac
2641 agagtctggc ctttccaatc cccatctcct tgcccccccc ttgccccccc cccgaaaaaa
2701 attgagcact taaacccctc ccttttggag ggggccccct gaagcgtcag gctgggggca
2761 gtctggtacg gaacatattt attgcctcca tgcatgtgtg tgtgtgtctg tgaggactgg
2821 tgtgcgtgga cacgtctgaa gcaggcgtgt ggggctcttt cagggaccac agaggaggga
2881 gcagtttgca gtgcccagcc accctgaaat ccccaataat ggtgcctcag tgggccccag
2941 agttccagtg ggagagtacg gttccctcct gtctccctct tcttttccgc acctccatct
3001 ttgtggataa taaataaata tgcacaggtt ctgagactga aaaaaaaaaa aaaaaaaa
//