LOCUS BC029795 1598 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens brain-derived neurotrophic factor, mRNA (cDNA clone MGC:34632 IMAGE:5193877), complete cds. ACCESSION BC029795 VERSION BC029795.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1598) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1598) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 50 Row: l Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 34106708. FEATURES Location/Qualifiers source 1..1598 /db_xref="H-InvDB:HIT000040877" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34632 IMAGE:5193877" /tissue_type="Brain, adult, 6 pooled whole brains" /clone_lib="NIH_MGC_114" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1598 /gene="BDNF" /gene_synonym="MGC34632" /db_xref="GeneID:627" /db_xref="HGNC:HGNC:1033" /db_xref="MIM:113505" CDS 332..1075 /gene="BDNF" /gene_synonym="MGC34632" /codon_start=1 /product="brain-derived neurotrophic factor" /protein_id="AAH29795.1" /db_xref="GeneID:627" /db_xref="HGNC:HGNC:1033" /db_xref="MIM:113505" /translation="MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLE SVNGPKAGSRGLTSLADTFEHMIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPL EPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMS GGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRAL TMDSKKRIGWRFIRIDTSCVCTLTIKRGR" BASE COUNT 505 a 327 c 365 g 401 t ORIGIN 1 ggctgctctc gctgccgctc cccccggcga actagcatga aatctccctg cctctgccga 61 gatcaaatgg agcttctcgc tgatggggtg cgagtattac ctccgccatg caatttccac 121 tatcaataat ttaacttctt tgctgcagaa cagaaggagt acataccggg caccaaagac 181 tcgcgccccc tccccccttt aattaagcga agggaacgtg aaaaaataat agagtgtggg 241 agttttgggg ccgaagtctt tcccggagca gctgccttga tggttacttt gacaagtagt 301 gactgaaaag ttccaccagg tgagaagagt gatgaccatc cttttcctta ctatggttat 361 ttcatacttt ggttgcatga aggctgcccc catgaaagaa gcaaacatcc gaggacaagg 421 tggcttggcc tacccaggtg tgcggaccca tgggactctg gagagcgtga atgggcccaa 481 ggcaggttca agaggcttga catcattggc tgacactttc gaacacatga tagaagagct 541 gttggatgag gaccagaaag ttcggcccaa tgaagaaaac aataaggacg cagacttgta 601 cacgtccagg gtgatgctca gtagtcaagt gcctttggag cctcctcttc tctttctgct 661 ggaggaatac aaaaattacc tagacgctgc aaacatgtcc atgagggtcc ggcgccactc 721 tgaccctgcc cgccgagggg agctgagcgt gtgtgacagt attagtgagt gggtaacggc 781 ggcagacaaa aagactgcag tggacatgtc gggcgggacg gtcacagtcc ttgaaaaggt 841 ccctgtatca aaaggccaac tgaagcaata cttctacgag accaagtgca atcccatggg 901 ttacacaaaa gaaggctgca ggggcataga caaaaggcat tggaactccc agtgccgaac 961 tacccagtcg tacgtgcggg cccttaccat ggatagcaaa aagagaattg gctggcgatt 1021 cataaggata gacacttctt gtgtatgtac attgaccatt aaaaggggaa gatagtggat 1081 ttatgttgta tagattagat tatattgaga caaaaattat ctatttgtat atatacataa 1141 cagggtaaat tattcagtta agaaaaaaat aattttatga actgcatgtg taaatgaagt 1201 ttatacagta cagtggttct acaatctatt tattggacat gtccatgacc agaagggaaa 1261 cagtcatttg cgcacaactt aaaaagtctg cattacattc cttgataatg ttgtggtttg 1321 ttgccgttgc caagaactga aaacataaaa agttaaaaaa aataataaat tgcatgctgc 1381 tttaattgtg aattgataat aaactgtcct ctttcagaaa acagaaaaaa acacacacac 1441 acacaacaaa aatttgaacc aaaacattcc gtttacattt tagacagtaa gtatcttcgt 1501 tcttgttagt actatatctg ttttactgct tttaacttct gatagcgttg gaattaaaac 1561 aatgtcaagg tgaaaaaaaa aaaaaaaaaa aaaaaaaa //