LOCUS BC029590 1514 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), short basic
domain, secreted, (semaphorin) 3D, mRNA (cDNA clone MGC:39708
IMAGE:5272175), complete cds.
ACCESSION BC029590
VERSION BC029590.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1514)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1514)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41406085.
FEATURES Location/Qualifiers
source 1..1514
/db_xref="H-InvDB:HIT000040837"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39708 IMAGE:5272175"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1514
/gene="SEMA3D"
/gene_synonym="coll-2"
/gene_synonym="MGC39708"
/gene_synonym="Sema-Z2"
/db_xref="GeneID:223117"
CDS 210..1460
/gene="SEMA3D"
/gene_synonym="coll-2"
/gene_synonym="MGC39708"
/gene_synonym="Sema-Z2"
/codon_start=1
/product="SEMA3D protein"
/protein_id="AAH29590.1"
/db_xref="GeneID:223117"
/translation="MADIRAVFNGPYAHKESADHRWVQYDGRIPYPRPGTCPSKTYDP
LIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVIAEDGQ
YDVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSSIILNMELSLKQQQLYIG
SRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGNACSRYAPTSKRRARRQDVKYGD
PITQCWDIEDSISHETADEKVIFGIEFNSTFLECIPKSQQATIKWYIQRSGDEHREEL
KPDERIIKTEYGLLIRSLQKKDSGMYYCKAQEHTFIHTIVKLTLNVIENEQMENTQRA
EHEEGKVKDLLAESRLRYKDYIQILSSPNFSLDQYCEQMWHREKRRQRNKGGPKWKHM
QEMKKKRNRRHHRDLDELPRAVAT"
BASE COUNT 492 a 306 c 357 g 359 t
ORIGIN
1 aacaaaacta cagcaagaca cagaaaggtg tgagctctgg aactacacag ttcatccatt
61 ctccatgcag tctttcattt tgaaaggagc caccttctat agaagatatt tatttactcc
121 ccacaagaga tgaaagaaat cctgtagtat atggagtctt tactacaacc agctccatct
181 tcaaaggctc tgctgtttgt gtgtatagca tggctgacat cagagcagtt tttaatggtc
241 catatgctca taaggaaagt gcagaccatc gttgggtgca gtatgatggg agaattcctt
301 atccacggcc tggtacatgt ccaagcaaaa cctatgaccc actgattaag tccacccgag
361 attttccaga tgatgtcatc agtttcataa agcggcactc tgtgatgtat aagtccgtat
421 acccagttgc aggaggacca acgttcaaga gaatcaatgt ggattacaga ctgacacaga
481 tagtggtgga tcatgtcatt gcagaagatg gccagtacga tgtaatgttt cttggaacag
541 acattggaac tgtcctcaaa gttgtcagca tttcaaagga aaagtggaat atggaagagg
601 tagtgctgga ggagttgcag atattcaagc actcatcaat catcttgaac atggaattgt
661 ctctgaagca gcaacaattg tacattggtt cccgagatgg attggttcag ctctccttgc
721 acagatgcga cacttatggg aaagcttgcg cagactgttg tcttgccaga gacccctact
781 gtgcctggga tggaaatgca tgctctcgat atgctcctac ttctaaaagg agagctagac
841 gccaagatgt aaaatatggc gacccaatca cccagtgctg ggacatcgaa gacagcatta
901 gtcatgaaac tgctgatgaa aaggtgattt ttggcattga atttaactca acctttctgg
961 aatgtatacc taaatcccaa caagcaacta ttaaatggta tatccagagg tcaggggatg
1021 agcatcgaga ggagttgaag cccgatgaaa gaatcatcaa aacggaatat gggctactga
1081 ttcgaagttt gcagaagaag gattctggga tgtattactg caaagcccag gagcacactt
1141 tcatccacac catagtgaag ctgactttga atgtcattga gaatgaacag atggaaaata
1201 cccagagggc agagcatgag gaggggaagg tcaaggatct attggctgag tcacggttga
1261 gatacaaaga ctacatccaa atccttagca gcccaaactt cagcctcgac cagtactgcg
1321 aacagatgtg gcacagggag aagcggagac agagaaacaa ggggggccca aagtggaagc
1381 acatgcagga aatgaagaag aaacgaaatc gaagacatca cagagacctg gatgagctcc
1441 ctagagctgt agccacgtag ttttctactt aatttaaaga aaagaattcc ttacctacaa
1501 aaaaaaaaaa aaaa
//