LOCUS BC029512 1583 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens phytanoyl-CoA 2-hydroxylase, mRNA (cDNA clone MGC:33777 IMAGE:5277185), complete cds. ACCESSION BC029512 VERSION BC029512.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1583) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1583) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: g Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 17999532. FEATURES Location/Qualifiers source 1..1583 /db_xref="H-InvDB:HIT000040793" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33777 IMAGE:5277185" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1583 /gene="PHYH" /gene_synonym="LN1" /gene_synonym="LNAP1" /gene_synonym="PAHX" /gene_synonym="PHYH1" /gene_synonym="RD" /db_xref="GeneID:5264" /db_xref="HGNC:HGNC:8940" /db_xref="MIM:602026" CDS 49..1065 /gene="PHYH" /gene_synonym="LN1" /gene_synonym="LNAP1" /gene_synonym="PAHX" /gene_synonym="PHYH1" /gene_synonym="RD" /codon_start=1 /product="phytanoyl-CoA 2-hydroxylase" /protein_id="AAH29512.1" /db_xref="GeneID:5264" /db_xref="HGNC:HGNC:8940" /db_xref="MIM:602026" /translation="MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQF QYTLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMR DVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN KPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLK PHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRK AISCHFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGE RTNL" BASE COUNT 479 a 344 c 360 g 400 t ORIGIN 1 taaatggggc agaggccggg aggggtgggg gttccccgcg ccgcagccat ggagcagctt 61 cgcgccgccg cccgtctgca gattgttctg ggccacctcg gccgcccctc ggccggggct 121 gtcgtagctc atcccacttc agggactatt tcctctgcca gtttccatcc tcaacaattc 181 cagtatactc tggataataa tgttctaacc ctggaacaga gaaaatttta tgaagaaaat 241 gggtttctag taatcaaaaa tcttgtacct gatgccgata ttcaacgctt tcggaatgag 301 tttgaaaaaa tctgcagaaa ggaggtgaaa ccattaggat taacagtaat gagagatgtg 361 accatttcga aatccgaata tgctccaagt gagaagatga tcacgaaggt ccaggatttc 421 caggaagata aggagctctt cagatactgc actctccccg agattctgaa atatgtggag 481 tgcttcactg gacctaatat tatggccatg cacacaatgt tgataaacaa acctccagat 541 tctggcaaga agacgtcccg tcaccccctg caccaggacc tgcactattt ccccttcagg 601 cccagcgatc tcatcgtttg cgcctggacg gcgatggagc acatcagccg gaacaacggc 661 tgtctggttg tgctcccagg cacacacaag ggctccctga agccccacga ttaccccaag 721 tgggaggggg gagttaacaa aatgttccac gggatccagg actacgagga aaacaaggcc 781 cgggtgcacc tggtgatgga gaagggcgac actgttttct tccatccttt gctcatccac 841 ggatctggtc agaataaaac ccagggattc cggaaggcaa tttcctgcca tttcgccagt 901 gccgattgcc actacattga cgtgaagggc accagtcaag aaaacatcga gaaggaagtt 961 gtaggaatag cacataaatt ctttggagct gaaaatagcg tgaacttgaa ggatatttgg 1021 atgtttcgag ctcgacttgt gaaaggagaa agaaccaatc tttgaaatag ccatctgcta 1081 taactctttc aacagaaaac caaaaccaaa cgaaatgtct aaggaaaatg ttttcttaat 1141 gagatgatgt aaccttttct atcacttgtt aaaagcagaa aacatgtatc aggtacttaa 1201 ttgcatagag ttagttttgc agcacaatgg tgttgcttta atggaaaaaa aaaaacagta 1261 aaagtgaaat attactgttt taaggaaaac taatttaggg tggcagccaa taaaggtggt 1321 tggtgtctaa tttaagtgtt aaatcaattt ctttcattca gttagctctt tacccaagaa 1381 gaagtgaatg atttggagct tagggtatgt tttgtatccc ctttctgata aacccattcc 1441 ctaccaattt tatgtcataa gagatttttt tcccccaaat ctagaacaat gtataataca 1501 ttcacatcta gtcaagggca taggaacggt gtcatggagt ccaaataaag tggatattcc 1561 tgctcggaaa aaaaaaaaaa aaa //