LOCUS       BC029512                1583 bp    mRNA    linear   HUM 17-JUL-2006
DEFINITION  Homo sapiens phytanoyl-CoA 2-hydroxylase, mRNA (cDNA clone
            MGC:33777 IMAGE:5277185), complete cds.
ACCESSION   BC029512
VERSION     BC029512.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1583)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAY-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 48 Row: g Column: 19
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 17999532.
FEATURES             Location/Qualifiers
     source          1..1583
                     /db_xref="H-InvDB:HIT000040793"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:33777 IMAGE:5277185"
                     /tissue_type="Brain, hippocampus"
                     /clone_lib="NIH_MGC_95"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..1583
                     /gene="PHYH"
                     /gene_synonym="LN1"
                     /gene_synonym="LNAP1"
                     /gene_synonym="PAHX"
                     /gene_synonym="PHYH1"
                     /gene_synonym="RD"
                     /db_xref="GeneID:5264"
                     /db_xref="HGNC:HGNC:8940"
                     /db_xref="MIM:602026"
     CDS             49..1065
                     /gene="PHYH"
                     /gene_synonym="LN1"
                     /gene_synonym="LNAP1"
                     /gene_synonym="PAHX"
                     /gene_synonym="PHYH1"
                     /gene_synonym="RD"
                     /codon_start=1
                     /product="phytanoyl-CoA 2-hydroxylase"
                     /protein_id="AAH29512.1"
                     /db_xref="GeneID:5264"
                     /db_xref="HGNC:HGNC:8940"
                     /db_xref="MIM:602026"
                     /translation="MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQF
                     QYTLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMR
                     DVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN
                     KPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLK
                     PHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRK
                     AISCHFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGE
                     RTNL"
BASE COUNT          479 a          344 c          360 g          400 t
ORIGIN      
        1 taaatggggc agaggccggg aggggtgggg gttccccgcg ccgcagccat ggagcagctt
       61 cgcgccgccg cccgtctgca gattgttctg ggccacctcg gccgcccctc ggccggggct
      121 gtcgtagctc atcccacttc agggactatt tcctctgcca gtttccatcc tcaacaattc
      181 cagtatactc tggataataa tgttctaacc ctggaacaga gaaaatttta tgaagaaaat
      241 gggtttctag taatcaaaaa tcttgtacct gatgccgata ttcaacgctt tcggaatgag
      301 tttgaaaaaa tctgcagaaa ggaggtgaaa ccattaggat taacagtaat gagagatgtg
      361 accatttcga aatccgaata tgctccaagt gagaagatga tcacgaaggt ccaggatttc
      421 caggaagata aggagctctt cagatactgc actctccccg agattctgaa atatgtggag
      481 tgcttcactg gacctaatat tatggccatg cacacaatgt tgataaacaa acctccagat
      541 tctggcaaga agacgtcccg tcaccccctg caccaggacc tgcactattt ccccttcagg
      601 cccagcgatc tcatcgtttg cgcctggacg gcgatggagc acatcagccg gaacaacggc
      661 tgtctggttg tgctcccagg cacacacaag ggctccctga agccccacga ttaccccaag
      721 tgggaggggg gagttaacaa aatgttccac gggatccagg actacgagga aaacaaggcc
      781 cgggtgcacc tggtgatgga gaagggcgac actgttttct tccatccttt gctcatccac
      841 ggatctggtc agaataaaac ccagggattc cggaaggcaa tttcctgcca tttcgccagt
      901 gccgattgcc actacattga cgtgaagggc accagtcaag aaaacatcga gaaggaagtt
      961 gtaggaatag cacataaatt ctttggagct gaaaatagcg tgaacttgaa ggatatttgg
     1021 atgtttcgag ctcgacttgt gaaaggagaa agaaccaatc tttgaaatag ccatctgcta
     1081 taactctttc aacagaaaac caaaaccaaa cgaaatgtct aaggaaaatg ttttcttaat
     1141 gagatgatgt aaccttttct atcacttgtt aaaagcagaa aacatgtatc aggtacttaa
     1201 ttgcatagag ttagttttgc agcacaatgg tgttgcttta atggaaaaaa aaaaacagta
     1261 aaagtgaaat attactgttt taaggaaaac taatttaggg tggcagccaa taaaggtggt
     1321 tggtgtctaa tttaagtgtt aaatcaattt ctttcattca gttagctctt tacccaagaa
     1381 gaagtgaatg atttggagct tagggtatgt tttgtatccc ctttctgata aacccattcc
     1441 ctaccaattt tatgtcataa gagatttttt tcccccaaat ctagaacaat gtataataca
     1501 ttcacatcta gtcaagggca taggaacggt gtcatggagt ccaaataaag tggatattcc
     1561 tgctcggaaa aaaaaaaaaa aaa
//