LOCUS BC029478 1174 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens clarin 3, mRNA (cDNA clone MGC:32871 IMAGE:4733535),
complete cds.
ACCESSION BC029478
VERSION BC029478.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1174)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1174)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: n Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748684.
FEATURES Location/Qualifiers
source 1..1174
/db_xref="H-InvDB:HIT000040768"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32871 IMAGE:4733535"
/tissue_type="Liver"
/clone_lib="NIH_MGC_76"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1174
/gene="CLRN3"
/gene_synonym="MGC32871"
/gene_synonym="TMEM12"
/gene_synonym="USH3AL1"
/db_xref="GeneID:119467"
/db_xref="HGNC:HGNC:20795"
CDS 164..844
/gene="CLRN3"
/gene_synonym="MGC32871"
/gene_synonym="TMEM12"
/gene_synonym="USH3AL1"
/codon_start=1
/product="clarin 3"
/protein_id="AAH29478.1"
/db_xref="GeneID:119467"
/db_xref="HGNC:HGNC:20795"
/translation="MPTTKKTLMFLSSFFTSLGSFIVICSILGTQAWITSTIAVRDSA
SNGSIFITYGLFRGESSEELSHGLAEPKKKFAVLEILNNSSQKTLHSVTILFLVLSLI
TSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILFVANTQSNQLSEEL
FQMLYPATTSKGTTHSYGYSFWLILLVILLNIVTVTIIIFYQKARYQRKQEQRKPMEY
APRDGILF"
BASE COUNT 338 a 250 c 243 g 343 t
ORIGIN
1 aatgtccatt agcataaccc ttcctcagga agagtgagat tttatatttg acaataaagt
61 gttagactcc atttctaaat accagacttc aaaagataag gttcaaaagt gttataagaa
121 gatattcctt tttttgtcct agagaactta ttttcctgtg aaaatgccta ccacaaagaa
181 gacattgatg ttcttatcaa gctttttcac cagccttggg tccttcattg taatttgctc
241 tattcttggg acacaagcat ggatcaccag tacgattgct gttagagact ctgcttcaaa
301 tgggagcatt ttcatcactt acggactttt tcgtggggag agtagtgaag aattgagtca
361 cggacttgca gaaccaaaga aaaagtttgc agttttagag atactgaata attcttccca
421 aaaaactctg cattcggtga ctatcctgtt cctggtcctg agtttgatca cgtcgctgct
481 gagctctggg tttaccttct acaacagcat cagcaaccct taccagacat tcctggggcc
541 gacgggggtg tacacctgga acgggctcgg tgcatccttc gtttttgtga ccatgatact
601 gtttgtggcg aacacgcagt ccaaccaact ctccgaagag ttgttccaaa tgctttaccc
661 ggcaaccacc agtaaaggaa cgacccacag ttacggatac tcgttctggc tcatactgct
721 cgtcattctt ctaaatatag tcactgtaac catcatcatt ttctaccaga aggccagata
781 ccagcggaag caggagcaga gaaagccaat ggaatatgct ccaagggacg gaattttatt
841 ctgaattctc tttcatctca ttttggcgtt gcatctattg tacatcagcc ctgagtagta
901 actggttagc ttctctggac aattcagcat ggtaacgtga ctgtcatctg tgacagcatt
961 tgtgtttcat gacactgtgt tcttcattga tgctgtactc ctgaaaattt ttcccacaag
1021 gttggggaaa tgaatgggaa atgtcgctgg tctgtgtggt attcaaagca gtagtatcat
1081 gatgagcgta acgacccttc tggcctggtc tcacgatctg aaataataaa aggctgtgtc
1141 atgcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//