LOCUS BC029478 1174 bp mRNA linear HUM 02-DEC-2006 DEFINITION Homo sapiens clarin 3, mRNA (cDNA clone MGC:32871 IMAGE:4733535), complete cds. ACCESSION BC029478 VERSION BC029478.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1174) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1174) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 41 Row: n Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22748684. FEATURES Location/Qualifiers source 1..1174 /db_xref="H-InvDB:HIT000040768" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:32871 IMAGE:4733535" /tissue_type="Liver" /clone_lib="NIH_MGC_76" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1174 /gene="CLRN3" /gene_synonym="MGC32871" /gene_synonym="TMEM12" /gene_synonym="USH3AL1" /db_xref="GeneID:119467" /db_xref="HGNC:HGNC:20795" CDS 164..844 /gene="CLRN3" /gene_synonym="MGC32871" /gene_synonym="TMEM12" /gene_synonym="USH3AL1" /codon_start=1 /product="clarin 3" /protein_id="AAH29478.1" /db_xref="GeneID:119467" /db_xref="HGNC:HGNC:20795" /translation="MPTTKKTLMFLSSFFTSLGSFIVICSILGTQAWITSTIAVRDSA SNGSIFITYGLFRGESSEELSHGLAEPKKKFAVLEILNNSSQKTLHSVTILFLVLSLI TSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILFVANTQSNQLSEEL FQMLYPATTSKGTTHSYGYSFWLILLVILLNIVTVTIIIFYQKARYQRKQEQRKPMEY APRDGILF" BASE COUNT 338 a 250 c 243 g 343 t ORIGIN 1 aatgtccatt agcataaccc ttcctcagga agagtgagat tttatatttg acaataaagt 61 gttagactcc atttctaaat accagacttc aaaagataag gttcaaaagt gttataagaa 121 gatattcctt tttttgtcct agagaactta ttttcctgtg aaaatgccta ccacaaagaa 181 gacattgatg ttcttatcaa gctttttcac cagccttggg tccttcattg taatttgctc 241 tattcttggg acacaagcat ggatcaccag tacgattgct gttagagact ctgcttcaaa 301 tgggagcatt ttcatcactt acggactttt tcgtggggag agtagtgaag aattgagtca 361 cggacttgca gaaccaaaga aaaagtttgc agttttagag atactgaata attcttccca 421 aaaaactctg cattcggtga ctatcctgtt cctggtcctg agtttgatca cgtcgctgct 481 gagctctggg tttaccttct acaacagcat cagcaaccct taccagacat tcctggggcc 541 gacgggggtg tacacctgga acgggctcgg tgcatccttc gtttttgtga ccatgatact 601 gtttgtggcg aacacgcagt ccaaccaact ctccgaagag ttgttccaaa tgctttaccc 661 ggcaaccacc agtaaaggaa cgacccacag ttacggatac tcgttctggc tcatactgct 721 cgtcattctt ctaaatatag tcactgtaac catcatcatt ttctaccaga aggccagata 781 ccagcggaag caggagcaga gaaagccaat ggaatatgct ccaagggacg gaattttatt 841 ctgaattctc tttcatctca ttttggcgtt gcatctattg tacatcagcc ctgagtagta 901 actggttagc ttctctggac aattcagcat ggtaacgtga ctgtcatctg tgacagcatt 961 tgtgtttcat gacactgtgt tcttcattga tgctgtactc ctgaaaattt ttcccacaag 1021 gttggggaaa tgaatgggaa atgtcgctgg tctgtgtggt attcaaagca gtagtatcat 1081 gatgagcgta acgacccttc tggcctggtc tcacgatctg aaataataaa aggctgtgtc 1141 atgcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //