LOCUS BC029224 1103 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens coiled-coil domain containing 42, mRNA (cDNA clone
MGC:34752 IMAGE:5172741), complete cds.
ACCESSION BC029224
VERSION BC029224.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1103)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1103)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21389578.
FEATURES Location/Qualifiers
source 1..1103
/db_xref="H-InvDB:HIT000040709"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34752 IMAGE:5172741"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1103
/gene="CCDC42"
/gene_synonym="FLJ32734"
/db_xref="GeneID:146849"
/db_xref="HGNC:HGNC:26528"
/db_xref="IMGT/GENE-DB:26528"
/db_xref="MIM:26528"
CDS 179..907
/gene="CCDC42"
/gene_synonym="FLJ32734"
/codon_start=1
/product="CCDC42 protein"
/protein_id="AAH29224.1"
/db_xref="GeneID:146849"
/db_xref="HGNC:HGNC:26528"
/db_xref="IMGT/GENE-DB:26528"
/db_xref="MIM:26528"
/translation="MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWL
LEKKKETEIMHQTMVQKKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQ
KRIRAMKKANKERELKCQHMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVV
ENSEESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMI
QQFIQDRSDIWAEVKKKEQQRVRI"
BASE COUNT 316 a 291 c 310 g 186 t
ORIGIN
1 gccgcccaac ctgtctccag ccaccttctg tggagtctca aactccatca tctgtgggac
61 cctgtaggcc gaagggagaa acaagagtgc agccaccacc cctgagccac ctgtggctct
121 gctacccaca atttcactgt gaagagtcag ctgcctgggc cgtgaggtca ctgccaccat
181 gagtctgggc atcatggaag aggaagacct ggccgagtac ttccggctgc agtatgggga
241 gcggctgctg cagatgctcc agaaactccc caatgttgag ggggcgtcgg agtccccatc
301 catctggcta ctggagaaga aaaaggagac agaaatcatg catcaaacta tggtgcagaa
361 gaagaagatg tttcagcgca gaatggaaac cctgaacctg cgctgggagg aactgggcgt
421 taaggaagcc caactgaagg ctcacatcca gaagtctgag cagttcatcc aggagaacga
481 ccagaaacgg atccgcgcca tgaagaaagc caacaaggag cgagaactca agtgccagca
541 catgcaggag ctgaccaagc gcaagcagga gatggtggcg ctgcggctgg agcaccagcg
601 gctgagcgcc aagctgaagg actactacat cttcaacaag tacctagaga aggtggtgga
661 gaactccgag gaatctcgct gggcgcacat ccagaacacc gcagccaaga agaccctcct
721 gcttggcacc attaagatgg ccacgctgaa cctcttccag atcgtgagca agcacctgaa
781 ggaggtgact gaggtggcac tggaggacac ccacaagcag ctggacatga tccagcaatt
841 tatccaagac cggtcggaca tctgggcaga ggtgaaaaag aaggaacaac agcgagtccg
901 gatttaagga ggcagccttg ttccagaatg tcctgagaca gagatcgtga aagaagaagt
961 cgtgagcctg cggtccagtc agtccagctc gggaccgatg cctgctgtgc cttcctgctg
1021 agggacacct gcttattttc ccccgtgggc ctcactctat ccctgaaaac agtgaatgtt
1081 aaaaaaaaaa aaaaaaaaaa aaa
//