LOCUS BC029141 1692 bp mRNA linear HUM 06-OCT-2003
DEFINITION Homo sapiens nephrosis 2, idiopathic, steroid-resistant (podocin),
mRNA (cDNA clone MGC:34362 IMAGE:5187188), complete cds.
ACCESSION BC029141
VERSION BC029141.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1692)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1692)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: g Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657614.
FEATURES Location/Qualifiers
source 1..1692
/db_xref="H-InvDB:HIT000040693"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34362 IMAGE:5187188"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1692
/gene="NPHS2"
/gene_synonym="PDCN"
/gene_synonym="SRN1"
/db_xref="GeneID:7827"
/db_xref="MIM:604766"
CDS 89..1036
/gene="NPHS2"
/gene_synonym="PDCN"
/gene_synonym="SRN1"
/codon_start=1
/product="NPHS2 protein"
/protein_id="AAH29141.1"
/db_xref="GeneID:7827"
/db_xref="MIM:604766"
/translation="MERRARSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPE
PSGSGRAGTPGEPRAPAATVVDVDEVRGSGEEGTEVVALLESERPEEGTKSSGLGACE
WLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLD
TYHKVDLRLQTLEIPFHEVALDSVTCIWGIKVERIEIKDVRLPAGLQHSLAVEAEAQR
QAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKPSTVVLPLPF
DLLNCLSSPSNRTQGSLPFPSPSKPVEPLNPKKKDSPML"
misc_feature 458..613
/gene="NPHS2"
/gene_synonym="PDCN"
/gene_synonym="SRN1"
/note="Band_7; Region: SPFH domain / Band 7 family. This
family includes proteins with high blast scores to known
Band 7 protein: HflC from E. coli, HflK from E. coli,
Prohibitin family members"
/db_xref="CDD:pfam01145"
BASE COUNT 413 a 443 c 438 g 398 t
ORIGIN
1 cgcggacccg cagcgactcc acagggactg cgctcccgtg cccctagcgc tcccgcgctg
61 ctgctccagc cgcccggcag ctctgaggat ggagaggagg gcgcggagct cctccaggga
121 gtcccgcggg cgaggcggca ggactccgca caaggagaac aagagggcaa aggccgagag
181 gagcggcggg ggccgcgggc gccaggaggc tgggcccgag ccgtcgggct ccggacgggc
241 ggggaccccg ggggagcccc gagcgcccgc cgccacggtg gtggacgtgg atgaggtccg
301 aggctccggc gaggagggca ccgaggtggt ggcgctgttg gagagcgagc ggcccgagga
361 aggtaccaaa tcctctggct taggggcctg tgagtggctt cttgtcctca tttccctgct
421 cttcatcatc atgaccttcc ctttttccat ctggttctgc gtaaaggttg tacaagagta
481 tgaaagagta attatattcc gactgggaca tctgcttcct ggaagagcca aaggccctgg
541 tcttttcttt tttttgccct gcctggatac ctaccacaag gttgaccttc gtctccaaac
601 tctggagata ccttttcatg aggttgcctt ggattcagtg acctgtattt ggggaatcaa
661 agtggagaga atagaaatta aagatgtgag gttgccagct gggcttcagc actcactggc
721 tgtggaggct gaagcgcaaa gacaagccaa agtgcggatg attgctgcag aagcggaaaa
781 ggctgcttct gagtccctga ggatggcagc tgagattctg tcaggcaccc ctgctgccgt
841 tcagcttcga tacctccaca cccttcagtc tctgtccaca gagaagcctt ccactgtggt
901 tttacctttg ccatttgacc tgctgaattg cctgtcttct cccagcaaca gaactcaggg
961 aagcctcccc ttcccaagtc cttccaaacc tgttgagcca ctaaatccta aaaagaaaga
1021 ctctcccatg ttataggaag gatggggcat aatgtgactg taaaggggcc tgccatagaa
1081 aagtcacatg cctgagggag acactctgtc ctcattccct gcccttcctt tggttgccat
1141 atggaatggc catggaatgc acgaagtcac aatgcaccat ccatgagaag acagtgaaat
1201 gatgtaatga cagagaaggc agacaacatg tttccgtgac tcatctagtc agagcaatta
1261 tgggaaacag ctttggtcaa cattctactt tggaaagaat tttgagtcta gatgtggtta
1321 aattttgact tctgggaact tggttcagat gtccctttca ctgtatgtcc tctgacccct
1381 ttggcaaggt tgccacagct cccacagccc ttcctacaag cacctatcat tgggcttgtc
1441 acactctatt gctcttctgt cccgaagatg cagtcttctc tccaatgata ctaccaagtc
1501 ttagttttcc tcaaccacac tcaatctttt tgctccaccc tgaattcctc acacctaacc
1561 ctgatagtta cctaaagtga cacttaaatg tttcagagtg aatgcaaaaa agagagatgt
1621 acttggagtc ggatatacaa tttatcccta attaaagcat ttaaaaggaa aaaaaaaaaa
1681 aaaaaaaaaa aa
//