LOCUS BC029054 1805 bp mRNA linear HUM 24-FEB-2004
DEFINITION Homo sapiens PDZ domain containing 7, mRNA (cDNA clone MGC:34150
IMAGE:5179973), complete cds.
ACCESSION BC029054
VERSION BC029054.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1805)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1805)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: a Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21914924.
FEATURES Location/Qualifiers
source 1..1805
/db_xref="H-InvDB:HIT000040671"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34150 IMAGE:5179973"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1805
/gene="PDZK7"
/gene_synonym="bA108L7.8"
/gene_synonym="FLJ23209"
/db_xref="GeneID:79955"
CDS 176..1711
/gene="PDZK7"
/gene_synonym="bA108L7.8"
/gene_synonym="FLJ23209"
/codon_start=1
/product="PDZK7 protein"
/protein_id="AAH29054.1"
/db_xref="GeneID:79955"
/translation="MAQGFAVGFDPLGLGDLSSGSLSSLSSRGHLGSDSGSTATRYLL
RKQQRLLNGPPRGIRASSPMGRVILINSPIEANSDESDIIHSVRVEKSPAGRLGFSVR
GGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLH
MMVRRMGRVPGIKFSKEKTTWVDVVNRRLVVEKCGSTPSDTSSEDGVRRIVHLYTTSD
DFCLGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVE
VLKGQTHIMLTIKETGRYPAYKEMVSEYCWLDRLSNGVLQQLSPASESSSSVSSCASS
APYSSGSLPSDRMDICLGQEEPGSRGPGWGRADTAMQTEPDAGGRVETWCSVRPTVIL
RDTAIRSDGPHPGRRLDSALSESPKTALLLALSRPRPPITRSQSYLTLWEEKQQRKEK
SGSPGEKGALQRSKTLMNLFFKGGRQGRLARDGRREAWTLDSGSLAKTYPRLDIEKEM
GAT"
misc_feature 422..670
/gene="PDZK7"
/gene_synonym="bA108L7.8"
/gene_synonym="FLJ23209"
/note="PDZ; Region: PDZ domain, PSD95(post synaptic
density protein) DlgA (Drosophila disc large tumor
suppressor) ZO1, a mammalian tight junction protein
domain"
/db_xref="CDD:cd00136"
misc_feature 839..1042
/gene="PDZK7"
/gene_synonym="bA108L7.8"
/gene_synonym="FLJ23209"
/note="PDZ; Region: PDZ domain, PSD95(post synaptic
density protein) DlgA (Drosophila disc large tumor
suppressor) ZO1, a mammalian tight junction protein
domain"
/db_xref="CDD:cd00136"
BASE COUNT 407 a 543 c 576 g 279 t
ORIGIN
1 cagcgaccag gcctggagct cacacttctg agaggcatcg caagcgaggg ccttcacgtt
61 actgagaccc cagccccgca cagaggctca tggagctcga agcacgcagg gctggcctct
121 ccagagctag cagattcctt ctggacctgt agggtgccgc cctagcccag ccgccatggc
181 gcagggtttc gcagtgggct tcgacccact gggcctagga gacctgagct ccggctctct
241 gagctccctc tcctcccgag gccacctagg cagcgactca ggctccaccg caacgcgata
301 cctgctaagg aagcaacaac ggctgctgaa cgggcccccc cgcggaatcc gagcctcatc
361 gcccatggga cgcgtcatcc tcatcaactc ccccatcgaa gccaacagtg atgaaagtga
421 catcatccat tcagtccggg tggagaagag tccagcaggg aggctgggct tcagcgtgcg
481 cgggggctca gagcatggcc tgggcatctt cgtcagcaaa gtggaggaag gcagcagtgc
541 agagcgggct ggcctgtgcg tgggggacaa gatcacggag gtgaatgggc tgagcctgga
601 gagcaccacc atgggtagcg ccgtaaaggt gctgaccagc agcagccgcc tgcacatgat
661 ggttcggcgc atgggccgtg tgccgggcat caagttctcc aaggagaaga ccacgtgggt
721 ggatgtggtg aatcggcgcc tggtagtgga gaagtgcggt tcaacaccct ccgacaccag
781 ctcagaagat ggtgtccggc gcatcgtcca cctatacaca acctccgacg acttctgcct
841 gggcttcaac atccgtgggg gcaaggagtt tggcctgggc atctatgtgt ccaaagtgga
901 ccatggtggg ctggccgagg agaatggcat caaggtgggg gaccaggtcc tggcagccaa
961 cggtgtcagg tttgacgaca tcagccacag ccaggccgtg gaggtgctga agggccaaac
1021 gcacatcatg ctgaccatca aggagaccgg ccggtatcct gcctacaagg agatggtttc
1081 tgagtactgc tggctggacc gactgagcaa cggggtgctg cagcagctgt ccccggcctc
1141 tgagagcagc tccagcgtct cttcgtgcgc ctccagcgcc ccctacagct cgggctccct
1201 gccgtcggac cgcatggaca tctgcctcgg gcaggaggag cccggcagcc gcggcccagg
1261 ctgggggcgg gcggacacag ccatgcagac ggagcccgat gcgggaggcc gggtggagac
1321 ctggtgcagc gtgcggccca cagtcatcct cagggacacc gccatccgct cggacggccc
1381 ccatcccggc cgccgccttg actctgcgct ctctgagtct cccaagacgg ctttgctgct
1441 ggccctcagc cgaccccggc cccccatcac gcgctcccag agctatctga ccttgtggga
1501 ggagaagcag cagcggaagg agaagtcggg gtcccctggg gagaagggtg ccctgcagcg
1561 ctccaagacg ctgatgaacc tcttcttcaa gggagggcgg caggggaggc tagcgcggga
1621 cgggcgcaga gaggcctgga cactggacag cgggagcctg gccaaaactt accctcgcct
1681 ggacatagag aaagagatgg gggcaacata gcaagaccct gtctctaaag aaaaaaaaaa
1741 gtaaaagaaa aataaagcac gtcttggctc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaa
//