LOCUS BC029042 2246 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PDZ domain containing 3, mRNA (cDNA clone MGC:34160
IMAGE:5186364), complete cds.
ACCESSION BC029042
VERSION BC029042.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2246)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2246)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: g Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21630284.
FEATURES Location/Qualifiers
source 1..2246
/db_xref="H-InvDB:HIT000040664"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34160 IMAGE:5186364"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2246
/gene="PDZD3"
/gene_synonym="FLJ22756"
/gene_synonym="IKEPP"
/db_xref="GeneID:79849"
/db_xref="HGNC:HGNC:19891"
/db_xref="MIM:607146"
CDS 10..1485
/gene="PDZD3"
/gene_synonym="FLJ22756"
/gene_synonym="IKEPP"
/codon_start=1
/product="PDZ domain containing 3"
/protein_id="AAH29042.1"
/db_xref="GeneID:79849"
/db_xref="HGNC:HGNC:19891"
/db_xref="MIM:607146"
/translation="MEKAADLQDTASLTLKFKFNPKLGIDNPVLSLAEDHDPYDPWSL
ERPRFCLLSKEEGKSFGFHLQQELGRAGHVVCRVDPGTSAQRQGLQEGDRILAVNNDV
VEHEDYAVVVRRIRASSPRVLLTVLARHAHDVARAQLGEDAHLCPTLGPGVRPRLCHI
VKDEGGFGFSVTHGNQGPFWLVLSTGGAAERAGVPPGARLLEVNGLWQSGQQVTLLVA
GPEVEEQCRQLGLPLAAPLAEGWALPTKPRCLHLEKGPQGFGFLLREEKGLDGRPGQF
LWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD
RFFSMVRLSPLLFLENTEAPASPQGSSSASLVETEDPSLEDTSVPSVPLGSRQCFLYP
GPGGSYGFRLSCVASGPRLFISQVTPGGSAARAGLQVGDVILEVNGYPVGGQNDLERL
QQLPEAEPPLCLKLAARSLRGLEAWIPPGAAEDWALASDLL"
BASE COUNT 500 a 579 c 709 g 458 t
ORIGIN
1 gatccagcta tggagaaagc cgcagatctg caggacacag cctcgttaac tctgaagttt
61 aagtttaacc caaagctggg cattgataat cctgtcctct ccctggccga agaccacgac
121 ccctatgatc cctggagcct ggagcggcct cgcttctgtt tactgagcaa agaggagggc
181 aagagttttg gcttccacct gcagcaggag ctgggcaggg ctgggcatgt ggtgtgcagg
241 gtggacccag gcacctctgc ccagcgccag ggtcttcagg aaggagacag gatcctggcg
301 gtgaacaatg atgttgtgga acacgaagac tatgcggtgg tggtacgccg catccgggcc
361 agcagccctc gggtgttgct gacagtattg gcacggcatg cacatgacgt ggcccgagct
421 cagctgggag aagatgccca cctctgtccc accctaggcc caggggtccg gccccggctg
481 tgccacatag tgaaagatga gggtggtttt ggcttcagtg tcacccatgg caatcagggt
541 cctttctggt tggtgctaag tactggagga gcagctgagc gggcaggggt gccccccggg
601 gcccggctgc tggaagtgaa tgggctttgg cagagtggac agcaggtgac cttgctggtg
661 gcagggccag aggtggaaga acagtgtcgc cagctgggat tgcccctggc tgcacccctg
721 gcagagggct gggcactgcc caccaagccc cgctgcctgc acctggagaa agggccccag
781 ggttttgggt tcctgctccg ggaggaaaag ggccttgacg gtcgccctgg acagttcctg
841 tgggaggtgg acccgggact gccagccaag aaggctggga tgcaggctgg ggaccggctg
901 gtggctgtgg ctggggagag cgtggagggg ctgggccatg aggagacagt gtccaggatc
961 caggggcagg gctcctgtgt ctccctcact gtcgtcgacc ctgaggcgga ccgcttcttc
1021 agcatggttc gcctgtcccc actcctcttc ttggagaaca cagaggctcc cgcctcgccc
1081 cagggcagca gctcagcctc actggttgag acagaggacc cttcacttga agacacaagc
1141 gtgccttctg tccctcttgg ctcccgacag tgcttcctgt accctgggcc tggtggcagc
1201 tatggcttcc gactcagttg tgtggccagt gggcctcgtc tcttcatctc ccaggtgact
1261 ccaggaggct cagctgcccg ggctgggctg caagtgggag acgtgattct ggaagtgaac
1321 gggtatcctg ttgggggaca gaatgacctg gagaggcttc agcagctgcc tgaggctgag
1381 ccacccctct gcctgaagct ggcagccagg tctctgcggg gcttggaagc ctggattccc
1441 cctggggctg cagaggactg ggctctggcc tcggatctac tgtagagcac ccctgcttgg
1501 tacagacata ctcaggggct accgtgtctt cactctccag cctgaggtgg tgaaggcagg
1561 atgctctctc taagccagac cagagggact cagacaccac cgatcacagg ctggcccagg
1621 tgctccctcc cttcctgcag gcccacctgc cagcagaggg tgtggttgga ggcctcagac
1681 aggtccctga aggagtctga ggctccagag gatgtcatat gggagtttta gagagctgtg
1741 tcccaaggat gaaggtgtgg ctgtgggtct ggctaggatt gaagccatct ggaccttttc
1801 tagatatgac tccaggaccc ttgagtgtaa tgcaaaaatt tggagaccag ctatgcctgc
1861 cctctgtggg tgccttagca ttgcgggagg gtggtgcttg gtcaccgttg catttgttat
1921 agaaatggcc attcgccata aatctgactg cctgtgtttg tgttggtggg ggtaaggggc
1981 agtggtgtga agggaccaaa agggcctcag gctcaagggg tgggatgcgg ctcctgcagg
2041 agagaggttg agacctggtc aaatttattt cctatcaatc actgaatctc agggataatg
2101 ggtcaaccca gaactgagat gtctgtatga cagccactcc taaaaataaa caacaacaaa
2161 aacaaaaaaa gaagaaaact aaataaaaat aaaaataaaa ataaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaaa
//