LOCUS BC028744 2015 bp mRNA linear HUM 01-OCT-2007
DEFINITION Homo sapiens plexin A4, mRNA (cDNA clone IMAGE:4828816), complete
cds.
ACCESSION BC028744
VERSION BC028744.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2015)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028744.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: b Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222359
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2015
/db_xref="H-InvDB:HIT000050962"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4828816"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2015
/gene="PLXNA4"
/gene_synonym="DKFZp434G0625"
/gene_synonym="FAYV2820"
/gene_synonym="PLEXA4"
/gene_synonym="PLXNA4A"
/gene_synonym="PRO34003"
/db_xref="GeneID:91584"
/db_xref="HGNC:HGNC:9102"
/db_xref="MIM:604280"
CDS 378..1946
/gene="PLXNA4"
/gene_synonym="DKFZp434G0625"
/gene_synonym="FAYV2820"
/gene_synonym="PLEXA4"
/gene_synonym="PLXNA4A"
/gene_synonym="PRO34003"
/codon_start=1
/product="plexin A4"
/protein_id="AAH28744.1"
/db_xref="GeneID:91584"
/db_xref="HGNC:HGNC:9102"
/db_xref="MIM:604280"
/translation="MKAMPWNWTCLLSHLLMVGMGSSTLLTRQPAPLSQKQRSFVTFR
GEPAEGFNHLVVDERTGHIYLGAVNRIYKLSSDLKVLVTHETGPDEDNPKCYPPRIVQ
TCNEPLTTTNNVNKMLLIDYKENRLIACGSLYQGICKLLRLEDLFKLGEPYHKKEHYL
SGVNESGSVFGVIVSYSNLDDKLFIATAVDGKPEYFPTISSRKLTKNSEADGMFAYVF
HDEFVASMIKIPSDTFTIIPDFDIYYVYGFSSGNFVYFLTLQPEMVSPPGSTTKEQVY
TSKLVRLCKEDTAFNSYVEVPIGCERSGVEYRLLQAAYLSKAGAVLGRTLGVHPDDDL
LFTVFSKGQKRKMKSLDESALCIFILKQINDRIKERLQSCYRGEGTLDLAWLKVKDIP
CSSALLTIDDNFCGLDMNAPLGVSDMVRGIPVFTEDRDRMTSVIAYVYKNHSLAFVGT
KSGKLKKSFGTGPQGGITQEWIGVAGDPPGANIASQEQMLCVYLQCSSHKAISDQRVQ
PLLCCFLNVPGNSS"
BASE COUNT 489 a 543 c 533 g 450 t
ORIGIN
1 atgagatgca gaccacatgg agaccttaat gcatggagat cttgcccact agtagcgtgg
61 cccagcgttt tgggacacag cccaatcaga ccagtatttc ccctctggag ctggattgag
121 gagggaacat ggggactgaa accttgaatg cttctgcttt aattaccccg aaaagcaagt
181 gccactgtta gaaatggaaa tcaggccagc tgctggggcg gcaagcagca ggaatgcaaa
241 tgtccatgac ccctcagatc cacacaaagc cttctgacct tggaatttaa gtaggggaga
301 ctgcattgct gagtcctggc cctctgaggg gacgactgtg cctgagtgct gctgtgccac
361 tgggacccgc ctctgccatg aaagccatgc cctggaactg gacctgcctt ctctcccacc
421 tcctcatggt gggcatgggc tcctccactt tgctcacccg gcagccagcc ccgctgtccc
481 agaagcagcg gtcatttgtc acattccgag gagagcccgc cgagggtttc aatcacctgg
541 tggtggatga gaggacagga cacatttact tgggggccgt caatcggatt tacaagctct
601 ccagcgacct gaaggtcttg gtgacgcatg agacagggcc ggacgaggac aaccccaagt
661 gttacccacc ccgcatcgtc cagacctgca atgagcccct gaccaccacc aacaatgtca
721 acaagatgct cctcatagac tacaaggaga acaggctgat tgcctgtggg agcctgtacc
781 aaggcatctg caagctgctg aggctggagg acctcttcaa gctgggggag ccttatcata
841 agaaggagca ctatctgtca ggtgtcaacg agagcggctc agtctttgga gtgatcgtct
901 cctacagcaa cctggatgac aagctgttca ttgccacggc agtggatggg aagcccgagt
961 attttcccac catctccagc cggaaactga ccaagaactc tgaggcggat ggcatgttcg
1021 cgtacgtctt ccatgatgag ttcgtggcct cgatgattaa gatcccttcg gacaccttca
1081 ccatcatccc tgactttgat atctactatg tctatggttt tagcagtggc aactttgtct
1141 actttttgac cctccaacct gagatggtgt ctccaccagg ctccaccacc aaggagcagg
1201 tgtatacatc caagctcgtg aggctttgca aggaggacac agccttcaac tcctatgtag
1261 aggtgcccat tggctgtgag cgcagtgggg tggagtaccg cctgctgcag gctgcctacc
1321 tgtccaaagc gggggccgtg cttggcagga cccttggagt ccatccagat gatgacctgc
1381 tcttcaccgt cttctccaag ggccagaagc ggaaaatgaa atccctggat gagtcggccc
1441 tgtgcatctt catcttgaag cagataaatg accgcattaa ggagcggctg cagtcttgtt
1501 accggggcga gggcacgctg gacctggcct ggctcaaggt gaaggacatc ccctgcagca
1561 gtgcgctctt aaccattgac gataacttct gtggcctgga catgaatgct cccctgggag
1621 tgtccgacat ggtgcgtgga attcccgtct tcacggagga cagggaccgc atgacgtctg
1681 tcatcgcata tgtctacaag aaccactctc tggcctttgt gggcaccaaa agtggcaagc
1741 tgaagaagtc cttcggcaca ggtccacaag gcggaatcac ccaggagtgg attggagtgg
1801 cgggagaccc acctggggcg aacattgctt ctcaggaaca gatgctgtgt gtgtatcttc
1861 agtgctcaag tcacaaagca atatcagatc agagagtcca gcctctgctt tgttgcttcc
1921 taaatgtacc tgggaattct tcctaaaatt actctggaaa tttgaatcca ctttaactaa
1981 aaataaatat tcatagcaca aaaaaaaaaa aaaaa
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