LOCUS BC028721 1789 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens solute carrier family 1 (high affinity
aspartate/glutamate transporter), member 6, mRNA (cDNA clone
MGC:33092 IMAGE:5269300), complete cds.
ACCESSION BC028721
VERSION BC028721.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1789)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1789)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028721.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: o Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4827011.
FEATURES Location/Qualifiers
source 1..1789
/db_xref="H-InvDB:HIT000040625"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33092 IMAGE:5269300"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1789
/gene="SLC1A6"
/gene_synonym="EAAT4"
/db_xref="GeneID:6511"
/db_xref="MIM:600637"
CDS 153..1091
/gene="SLC1A6"
/gene_synonym="EAAT4"
/codon_start=1
/product="SLC1A6 protein"
/protein_id="AAH28721.1"
/db_xref="GeneID:6511"
/db_xref="MIM:600637"
/translation="MSSHGNSLFLRESGQRLGRVGWLQRLQESLQQRALRTRLRLQTM
TLEHVLRFLRRNAFILLTVSAVVIGVSLAFALRPYQLTYRQIKYFSFPGELLMRMLQM
LVLPLIVSSLVTGMASLDNKATGRMGMRAAVYYMVTTIIAVFIGILMVTIIHPGKGSK
EGLHREGRIETIPTADAFMDLIRNMFPPNLVEACFKQFKTQYSTRVVTRTMVRTENGS
EPGASMPPPFSVENGTSFLENVTRALGTLQEMLSFEETVPVPGSANGINALGLVVFSV
AFGLVIGGMKHKGRVLRDFFDSLNEAIMRLVGIIIW"
BASE COUNT 366 a 491 c 444 g 488 t
ORIGIN
1 ggtccggtcc ccgcgccggt gctgcacagt ccctggcggg tccccgcggc cccggccggg
61 cgcttcgccg ggctccggct cctgcatccg ggcgcagcgc gcaggccgag gcgcgggcag
121 gccgcccccg ccgctccgga cgccgataga ccatgagcag ccatggcaac agcctgttcc
181 tgcgggagag cggccagcgg ctgggccggg tgggctggct gcagcggctg caggaaagcc
241 tgcagcagag agcactgcgc acgcgcctgc gcctgcagac catgaccctc gagcacgtgc
301 tgcgcttcct gcgccgaaac gccttcattc tgctgacggt cagcgccgtg gtcattgggg
361 tcagcctggc ctttgccctg cgcccatatc agctcaccta ccgccagatc aagtacttct
421 cttttcctgg agagcttctg atgaggatgc tgcagatgct ggtgttacct ctcattgtct
481 ccagcctggt cacaggtatg gcatccctgg acaacaaggc cacggggcgg atggggatgc
541 gggcagctgt gtactacatg gtgaccacca tcatcgcggt cttcatcggc atcctcatgg
601 tcaccatcat ccatcccggg aagggctcca aggaggggct gcaccgggag ggccggatcg
661 agaccatccc cacagctgat gccttcatgg acctgatcag aaatatgttt ccaccaaacc
721 ttgtggaggc ctgcttcaaa cagttcaaga cgcagtacag cacgagggtg gtaaccagga
781 ccatggtgag gacagagaac gggtctgagc cgggtgcctc catgcctcct ccattctcag
841 tggagaacgg aaccagcttc ctggaaaatg tcactcgggc cttgggtacc ctgcaggaga
901 tgctgagctt tgaggagact gtacccgtgc ctggctccgc caatggcatc aacgccctgg
961 gcctcgtggt cttctctgtg gcctttgggc tggtcattgg tggcatgaaa cacaagggca
1021 gagtcctcag ggacttcttc gacagcctca atgaggctat tatgaggctg gtgggcatca
1081 ttatctggtg agtcctggtc tgtgcccacg ggatggtgga gccagagctg ggaagtcagg
1141 ctgtggggaa gctgccgaag ggcttgctgg ggacttttgg tcattcattt acgtattggg
1201 tgattcactt acccactcac caactcattc attcatgtct ttctgggatg atttcatcac
1261 tagttgactt ccttgttcat ctgttcattc attcattctt ctatgcattg gttagttcat
1321 ggaatatctc actctttcat tcattcatgt ccttctgcaa tgattcattc actgctttgt
1381 tcatctgttc attcactcat tcttctatgc attgatgaaa tcactcattc agtgatttat
1441 tcatctatac tcatgcttca atgcattgat ttactcattt cctcatgcat ttattcattc
1501 atctatgcat tggttaaatc actggccaac tcactaactc attcattcat tcacactttt
1561 ctgcaatgat ttgttcactt gttcactccc ttgcttatct gttcattcac tcattcttca
1621 atacattgac caagccattc actgacattt attcagctac atttattctt tcatgcattg
1681 gtttctggat ttatttggtc attcatttat ttattttgca aaattaatgt atttttaatt
1741 gacaaataaa aactgtatat attttcatgt gcaacaaaaa aaaaaaaaa
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