LOCUS BC028696 2632 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens RAB40C, member RAS oncogene family, mRNA (cDNA clone
MGC:26738 IMAGE:4826800), complete cds.
ACCESSION BC028696
VERSION BC028696.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2632)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2632)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: p Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46195788.
FEATURES Location/Qualifiers
source 1..2632
/db_xref="H-InvDB:HIT000259008"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26738 IMAGE:4826800"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2632
/gene="RAB40C"
/gene_synonym="RARL"
/db_xref="GeneID:57799"
/db_xref="HGNC:HGNC:18285"
CDS 122..967
/gene="RAB40C"
/gene_synonym="RARL"
/codon_start=1
/product="RAB40C, member RAS oncogene family"
/protein_id="AAH28696.1"
/db_xref="GeneID:57799"
/db_xref="HGNC:HGNC:18285"
/translation="MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYA
YSNGIDYKTTTILLDGRRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSF
DGIDRWIKEIDEHAPGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCN
FNVIESFTELSRIVLMRHGMEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTI
KSHLKSFSMANGMNAVMMHGRSYSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRS
NCKIS"
BASE COUNT 476 a 865 c 822 g 469 t
ORIGIN
1 agcggggtcg ccgtggggcg gacgcaacgg gcgcaggtgc ggggcgcggg ctctctcacg
61 ccgcggcctc acccggcggt gcttcggcag gcggccggcg cggggcgcag gcggcgcggc
121 catgggctcg cagggcagtc cggtgaagag ctacgactac ctgctcaagt tcctgctggt
181 gggcgacagc gacgtgggca agggcgagat cctggagagc ctgcaggacg gcgcggcaga
241 gtccccgtac gcctacagta acgggatcga ctacaagacc accaccatcc tgctggacgg
301 ccggcgcgtg aggctggagc tctgggacac gtcgggccag ggccggttct gcaccatctt
361 caggtcctac tccaggggcg ctcaggggat cctcttggtg tatgacatca ccaaccgctg
421 gtcctttgac ggcatcgacc gctggatcaa ggagatcgat gagcatgcac ccggagtccc
481 ccggatcttg gttggaaacc ggctgcacct ggccttcaag cggcaggtcc cgacggagca
541 ggcccgcgcg tacgcagaga agaactgcat gaccttcttt gaggtcagcc ccctgtgcaa
601 cttcaacgtc atcgagtcct tcacggagct atcccgcatc gtgctcatgc ggcacggcat
661 ggagaagatc tggaggccca accgagtgtt cagcctgcag gacctctgct gccgggccat
721 cgtctcctgc acccccgtgc acctcatcga caagcttcca ctgcccgtca ccatcaagag
781 ccacctcaag tccttctcga tggccaacgg catgaacgcg gtcatgatgc acggccgttc
841 ctactccctg gccagcgggg ccgggggcgg cggcagcaag ggcaacagcc tcaagaggtc
901 caagtccatc cgtccacccc agagcccccc ccagaactgc tcgcggagta actgcaagat
961 ctcctagcgg ggatgggcgg ggccgcctgt gcagatgcca ggagggctcg agctggacac
1021 tcctggctgg acgccaggcc agtgccgcct acgtggagac tgtccacaca gctgcctcag
1081 aagcgccggg ctttcctcac acctgagccg ggtgcgagga ggagcatgca cggaccaagc
1141 gcggcaggcg ggaggagggg gcgcggctgg gctgctggtg cttccgggaa tcttggtcgg
1201 aaacaagccg ggcctcccca gctgcctggg cttgaccggc ggggagcctg gttggccttt
1261 cttatttata tagagaacac ttcacttttt tgtacatttt taaggggcct tcagggaagc
1321 ctgggtgtgg cccggtggtg gtgcactggt gacttcatgg ccacgccagc tgcggggacg
1381 cacttgggac tcctcgagag gggactcgcg gccgcgatgg caaggcatcc tgtgaattca
1441 tgcgctgcga gtggcggggc tgcccagagg ccgggggagc agacagggcc ggtgctccct
1501 ctggaagctt gggtgaccgg ggccctggct cccacgggat ggagggtgtg gtcctgtggt
1561 cagagcccaa gcagcactca ggagagggga gaaaggaggt gcacctggca gcccacattt
1621 ttgttgctcc ccaaatccct ccccacgtgg ggatgagaac cttcctgctg tgatgtgaca
1681 ccttcgggga cattgaccac tcaaaactca gatcatctcg cccaccctgg agagtgcaga
1741 gctatctgta gacttaggaa tacttgatgg gcagcggtgc agaccccggg cacctgcgtg
1801 cagcctcctg ttctcggcag cttctgtcgc tggccctggg gtccccacag ctgcagctct
1861 cctgtgaggt tgcacggcat cagaaccatc ctgaccttct tagggacgtg cctggaacca
1921 cctcgtccac gtccacgtcc acctgggggc ctcgggaggc taggcccctc ctcaaaggcc
1981 caccagcccg gcgctcatgc tgagccccag gcacgcaggg ccggccacct ctctcctgaa
2041 gccattggcc gctcctccac ccagtgcttc tgcccatgcc tgccccagca gcccctctgc
2101 acggtcacca tcgcctgggc ctgcccacag cactggtgct cacctctacc tcctgtcctc
2161 aggccgtgcg gcacgacatg gccagcacgc agaaggagcc ctcccgggac ccaggacccc
2221 ccgtggtgga ctccgcggca catgcttccc aaggtggtcc cacggagggt gttactgggc
2281 accagtggac tcgccccatg gcccgttcct gggagatgag ggccgtggcc tgcatgaact
2341 accagatgag taagggaacc ccaggcaggc ggccctgcca cagcccccaa agacactggc
2401 ctcctgctcc agcttccctg tcctggcccc acctgtcctg ttgctgccag cagggccctt
2461 gtttggggtt atgaacaaac ctcacagact ttgaggacct ggatggtcct gcattcacgg
2521 catcaacact acccgcgctg ctgttagaca ctccgccatt cctggttctc tccgaaccgt
2581 tctttgtaca gtaaatgtaa ttcagctgtg gtccccaaaa aaaaaaaaaa aa
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