LOCUS BC028694 3784 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens tudor domain containing 7, mRNA (cDNA clone MGC:26612
IMAGE:4837714), complete cds.
ACCESSION BC028694
VERSION BC028694.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3784)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3784)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: m Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24307950.
FEATURES Location/Qualifiers
source 1..3784
/db_xref="H-InvDB:HIT000040609"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26612 IMAGE:4837714"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3784
/gene="TDRD7"
/gene_synonym="PCTAIRE2BP"
/gene_synonym="RP11-508D10.1"
/gene_synonym="TRAP"
/db_xref="GeneID:23424"
/db_xref="HGNC:HGNC:30831"
CDS 225..3521
/gene="TDRD7"
/gene_synonym="PCTAIRE2BP"
/gene_synonym="RP11-508D10.1"
/gene_synonym="TRAP"
/codon_start=1
/product="tudor domain containing 7"
/protein_id="AAH28694.1"
/db_xref="GeneID:23424"
/db_xref="HGNC:HGNC:30831"
/translation="MLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQL
GFPTLEAYLRSVPAVVRIETSRSGEITCYAMACTETARIAQLVARQRSSKRKTGRQVN
CQMRVKKTMPFFLEGKPKATLRQPGFASNFSVGKKPNPAPLRDKGNSVGVKPDAEMSP
YMLHTTLGNEAFKDIPVQRHVTMSTNNRFSPKASLQPPLQMHLSRTSTKEMSDNLNQT
VEKPNVKPPASYTYKMDEVQNRIKEILNKHNNGIWISKLPHFYKELYKEDLNQGILQQ
FEHWPHICTVEKPCSGGQDLLLYPAKRKQLLRSELDTEKVPLSPLPGPKQTPPLKGCP
TVMAGDFKEKVADLLVKYTSGLWASALPKAFEEMYKVKFPEDALKNLASLSDVCSIDY
ISGNPQKAILYAKLPLPTDKIQKDAGQAHGDNDIKAMVEQEYLQVEESIAESANTFME
DITVPLLMIPTEASPSVLVVELSNTNEVVIRYVGKDYSAAQELMEDEMKEYYSKNPKI
TPVQAVNVGQLLAVNAEEDAWLRAQVISTEENKIKVCYVDYGFSENVEKSKAYKLNPK
FCSLSFQATKCKLAGLEVLSDDPDLVKVVESLTCGKIFAVEILDKADIPLVVLYDTSG
EDDININATCLKAICDKSLEVHLQVDAMYTNVKVTNICSDGTLYCQVPCKGLNKLSDL
LRKIEDYFHCKHMTSECFVSLPFCGKICLFHCKGKWLRVEITNVHSSRALDVQFLDSG
TVTSVKVSELREIPPRFLQEMIAIPPQAIKCCLADLPQSIGMWTPDAVLWLRDSVLNC
SDCSIKVTKVDETRGIAHVYLFTPKNFPDPHRSINRQITNADLWKHQKDVFLSAISSG
ADSPNSKNGNMPMSGNTGENFRKNLTDVIKKSMVDHTSAFSTEELPPPVHLSKPGEHM
DVYVPVACHPGYFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVEKDQVYAAKVENK
WHRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDMFRKLPFQAVTAQLAGVKCN
QWSEEASMVFRNHVEKKPLVALVQTVIENANPWDRKVVVYLVDTSLPDTDTWIHDFMS
EYLIELSKVN"
BASE COUNT 1170 a 777 c 903 g 934 t
ORIGIN
1 agcgggaggc caggctgccc tcgaagcggg gcggggcgaa gcggggcggg gccgagcagg
61 gcggggcggg ggcttgaggt gattcccaag ccgcggggcg gctccggtgg tgcggggaaa
121 ccgaaagtgg gcggcggccg cggcggggcc cctggcggag acggcggcag gagctgggcc
181 cagagacgcg gggacgggcc gtgggccccc ggaacgaggc aaagatgctg gaaggagatc
241 tggtttcaaa gatgctacga gctgttctgc agtctcataa gaatggagta gcattacccc
301 ggctccaagg agagtacaga tccttgactg gagactggat ccccttcaaa cagctaggtt
361 tccctacact agaagcctat ctgagaagtg tgccagcagt ggtcaggata gagactagta
421 gatctggaga gattacctgc tatgccatgg cctgcacaga aactgcaaga attgctcagc
481 ttgtggctcg tcaaaggagt tctaaaagga aaaccgggcg tcaagttaat tgtcagatga
541 gagtgaagaa aaccatgcca ttttttctag aaggaaaacc aaaagcaacc ctcagacaac
601 caggatttgc ttcaaatttt tctgttggca aaaaacctaa tccagcaccg ttaagagaca
661 aaggaaactc tgttggagtt aagcctgatg ctgaaatgtc tccttatatg ctacacacaa
721 ctcttggaaa tgaagcattc aaagacattc cagtgcaaag gcatgtgacc atgtccacca
781 acaacaggtt tagcccaaag gcgtcccttc aaccaccttt gcagatgcat ctctcaagaa
841 cctctactaa ggaaatgagt gataatttaa atcagactgt tgaaaaaccc aatgtcaagc
901 ctcctgcctc ttacacttat aaaatggatg aggttcaaaa tcgcataaag gaaatactaa
961 acaagcataa caatggcatt tggatatcta agcttccaca tttttacaaa gagttatata
1021 aagaagacct taatcaagga attttacaac agtttgaaca ctggcctcat atttgcacgg
1081 tggagaaacc ttgcagtggt ggccaagatt tacttcttta tccagctaag agaaagcagc
1141 ttttgagaag tgaactggat actgagaaag tacctctatc cccactacct ggtcccaaac
1201 aaacaccacc gttgaaaggg tgtccaacag ttatggcagg agactttaaa gaaaaagtgg
1261 cagacctgct ggtgaaatac acaagtggcc tttgggccag tgcacttccg aaagcatttg
1321 aggaaatgta caaagtgaaa ttccctgagg atgccttaaa aaatcttgcc tcactttctg
1381 atgtatgcag catagactac atttctggaa atccccagaa ggccattctc tatgctaaac
1441 ttccattgcc cactgacaaa atccaaaagg atgcagggca agcacatggt gataatgata
1501 tcaaggctat ggttgaacaa gagtatttgc aggtagaaga aagcattgct gaaagtgcta
1561 atacctttat ggaggacata acagttcctc ttttaatgat tccaactgaa gcatcaccat
1621 ctgtattggt ggttgaactg agcaacacaa atgaagtggt tatcaggtat gtgggcaaag
1681 actattctgc tgctcaggaa ttaatggaag atgagatgaa ggaatattac agtaagaatc
1741 ctaagatcac accagtccag gctgtgaatg ttgggcagtt gctggccgta aatgccgagg
1801 aggacgcctg gttacgggca caggtcatct caacagaaga gaacaaaata aaggtatgct
1861 atgttgacta tggttttagt gaaaatgttg aaaaaagcaa agcatacaaa ttaaacccga
1921 agttttgttc actctcattt caagctacaa aatgtaagct tgcaggcttg gaagtcctaa
1981 gcgatgaccc tgatctagtg aaggtggttg aatctttaac ttgtggaaag atctttgcag
2041 tggaaatact tgacaaagct gacattccac ttgttgttct gtacgatacc tcaggagaag
2101 atgatatcaa tatcaatgcc acctgcttga aggctatatg tgacaagtca ctagaggttc
2161 acctgcaggt tgacgccatg tacacaaatg tcaaagtaac taatatttgc tctgatggga
2221 cactctactg ccaggtgcct tgtaagggtc tgaacaagct cagtgacctt ctacgtaaga
2281 tagaggacta cttccattgc aagcacatga cctctgagtg ctttgtttca ttacccttct
2341 gtgggaaaat ctgcctcttc cattgcaaag gaaaatggtt acgagtagag atcacaaatg
2401 ttcacagcag ccgggctctt gatgttcagt tcctggactc tggcactgtg acatctgtaa
2461 aagtgtcaga gctcagggaa attccacctc ggtttctaca agaaatgatt gcaataccac
2521 ctcaggccat taagtgctgt ttagcagatc ttccacaatc tattggcatg tggacaccag
2581 atgcagtgct gtggttaaga gattctgttt tgaattgctc ggactgtagc attaaggtta
2641 caaaagtgga tgaaaccaga gggatcgcac atgtttattt atttacccct aagaacttcc
2701 ctgaccctca tcgcagtatt aatcgccaga ttacaaatgc agacttgtgg aagcatcaga
2761 aggatgtgtt tttgagtgcc atatccagtg gagctgactc tcccaacagc aaaaatggca
2821 acatgcccat gtcgggcaac actggagaga atttcagaaa gaacctcaca gatgtcatca
2881 aaaagtccat ggtggaccat acgagcgctt tctccacaga ggaactgcca cctcctgtcc
2941 acttatcaaa gccaggggaa cacatggatg tgtatgtgcc tgtggcctgt cacccaggct
3001 acttcgtcat ccagccttgg caggagatac ataagttgga agttctgatg gaagagatga
3061 ttctatatta cagcgtgtct gaagagcgcc acatagcagt ggagaaagac caagtgtatg
3121 ctgcaaaagt ggaaaataag tggcacaggg tgcttttaaa aggaatcctg accaatggac
3181 tggtatctgt gtatgagctg gattatggca aacacgaatt agtcaacata agaaaagtac
3241 agcccctagt ggacatgttc cgaaagctgc ccttccaagc agtcacagct caacttgcag
3301 gagtgaagtg caaccagtgg tctgaggagg cttctatggt gtttcgaaat catgtggaga
3361 agaaacctct ggtggcactg gtgcagacag tcattgaaaa tgctaaccct tgggaccgga
3421 aagtagtggt ctacttagtg gacacatcgt tgccagacac cgatacctgg attcatgatt
3481 ttatgtcaga gtatctgata gagctttcaa aagttaatta atgactgcct ctgaaacctt
3541 gacaactaat tcagattttt tagcaataac aaaatgtagt aggcttaaaa aaaatcttaa
3601 ctctgctaca tggctctgac tgctgtgggg gattgaaaag aatatgctta tgtttgatga
3661 aagatattta acaagttttg ttttaacaga gttgactttt caaagaaaat tgtacttgaa
3721 ttattactat aatattagaa taaaaatgtt tatcaatata aaaaaaaaaa aaaaaaaaaa
3781 aaaa
//