LOCUS BC028580 4257 bp mRNA linear HUM 18-DEC-2008
DEFINITION Homo sapiens PIP5K1A pseudogene, mRNA (cDNA clone IMAGE:4828163).
ACCESSION BC028580
VERSION BC028580.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4257)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4257)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028580.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: d Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction, Similarity but not identity
to protein.
FEATURES Location/Qualifiers
source 1..4257
/db_xref="H-InvDB:HIT000040572"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4828163"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 1116 a 980 c 987 g 1174 t
ORIGIN
1 ggtcgaagcg gctgggttgg gcggtaaaca ggccgtgggt agggaggaca gagaggcggc
61 gttcgctcct ctgggacttt tcacgcctcg ttttgttttt tttcttcaga tgtggctttt
121 tcctgacgca gggtccaagc agtcagcttg agcttactct tctgtgaaag cggaaagtct
181 cctctgagga aagcggttga acttgtggag ggcgtgcgag acgggcgttc tcccccatgc
241 caggcgaatg gtgccgcctt gagctggtcc agcagccggc tcgatgacag gtctgaggga
301 ggccccagag gcggcgggga ggtggcccgc agaacgcggg ttctgtaaag acacgtggag
361 aagattcgat tccgagaaca ggaagaggcg gatggaaaga cagccgggcg gctgccggga
421 agggggctgc caagatggcg tcggcctcct cccaaccgtc gttggcggtc ggtttttcat
481 cctttgatcc cggggcccct tcctgtaccg catcctcagc atctggaatc ttgagcccca
541 cggcatctga ggtgccttat gcctctggca tgcccatcaa gaaaacaggc catcgaggtg
601 tcgattcctc aggagagaca acatataaaa agacaacctc aacagccttg aaaggtgcca
661 tccagttagg cattacttac actgtgggga gcctgagtac caaaccagag cgtgatgtcc
721 tcatgcaaga tttctacgtg gtggagagta tcttcttccc cagtgaaggg agcaacctga
781 cccctgctca tcactacaat gccttccgtt tcaagaccta tgcgccggtt gccttccgct
841 actttcggga gctatttggt atcccgcccg atgattactt gtgctccctc tgcagtgagc
901 cgctgattga actctgtagc tctggagcta gtggttccct gttctatgtg tccagcgacg
961 atgaactcat tattaagaca ctccaacata aagaggcgga gtttctgcag aagctgcttc
1021 caggatacta cttgaacctc agccagaacc ctcggacttt gctgcctaaa ttctttggac
1081 tgtactgtgt gcagacaggt ggcaagaaca ttcggattgt ggtgatgaac aatcttttac
1141 caagatccgt caaaatgcat atcaaatatg acctcaaagg ctcaacctac aaacgccggg
1201 cttcccagaa agagcgagag aagcctcttc ccacatttaa agatctagac ttcttacaag
1261 acatccctga tggtcttttt ttggatgctg acacgtacaa tgctctctgt aagaccctgc
1321 agcgtgactg tttggtgctg cagagcttca agataatgga ctatagcctc tggctgtcaa
1381 tccacaatat agatcatgca caacgagagc ccttaagcag cgacactctt caagtgtcaa
1441 tcgacactca aagactggct ccccaaaagg ctctgtattc cacagccatg gaattcatcc
1501 agggagaggc tcggctgggc gacaccatgg aggccgatga ccatatgggt ggcatccctg
1561 ctcagaatag taaaggggaa aggcttctgc tttatattgg catcattgac attctacagt
1621 cttacacgtt tcttaagaag ttggagcact cttggaaagc cgtggtacat gatggggacg
1681 ctgtctcagt gcatcgccca ggcttctacg ctgaacggtt ccagcacttc atgtgcaacg
1741 cagtatttaa gaagatcccc ttgaagcctt ctccttccaa aaagtttcgg tctggcttat
1801 ctttctctct gcatacgggc tccagtggca actcctgcat tacttaccag ccactggtct
1861 ctgaggaaca caagtcacaa gtgataaagg tgcaagtgga gccaggtgtt caccttggtc
1921 gttctgatgt tttacctcag acctcagaat ccacctttgg aggaaatcag tgagggctca
1981 ctattactga ccacagtttc tcacctgtag ttggaaagac tttgcatatg ctaactacaa
2041 gtataacctt ggaaaaactt gaatgtacag agtcagagtt cacccattaa gcgcaaagcc
2101 tcagaagacc tggaacaaga ttctgcttct ctgtgatccc aagatgtcag cccttgcccc
2161 agcaatgttg aattttcttc tacttggtca tcaaaaaagg agtgtaaaag aagcgaggtg
2221 cactctccat cttcttcctg aagaagagcc tcctattctt ctctgtcctc ataaatgggc
2281 attagtgcct tggacagttg aggaccactc catcctctcc acagcatccc ctccactcca
2341 gagttgggtg gcacggattt tcaactggct aaccttggct tccacaactg aatttttttc
2401 agacccccat tcttcatgct ggaaatgaga ttactggact tggcagtttt ctttcccctc
2461 atctttcacc aggaactgga ctcttcattt cctcaggaca gactagctgc cacattatcc
2521 ccaccttagt tctttctctc tgatccctgg aagaaaaccc ctgtaatctc tgtataggtt
2581 tttgggggat aagggtgttt aaccacctcc caactttgtt tttttttttt ttcctgaaaa
2641 aaggaaaaag cgcacagcac caaatttcaa gccagtttca gatcaaaaat ccagaagtgt
2701 tgacgagatg cctatccgta gggttccctc agaagagcca cggtgtttgt gaagggaaaa
2761 gtagtgattg ctctgccaga agcagctcct ctttaaactc ctcatctctt gatgaatttc
2821 ttaaggctga aggaatggag agagtgggac gtggggtaat ctttaccact tttgttaaaa
2881 catgaggcag ccatgggttg ggagatcata gcccttcctg ggcagaatcc tattcactgc
2941 caggctataa tgattattac tgttttgcaa tttgaaatat attctggttg cttttctaaa
3001 tatgaagact taccaaatga attttagatc attctccaaa ggagattttt ttgctcttcc
3061 catcttttcc aacagtgttc tcctgtttgt ggtgctaagg tgaagagggg acacctctgt
3121 ctgtttaaca ggcagtccgt atctgtgagg ccagcaaata ttttcttaaa ttcatgggga
3181 gacagtggat tcttgcctcg gtgaggtcat tgctatgcca tatgtcctac ccccgtcttc
3241 atgcagagaa gttggaaatg ggggctacat atgccctctc ctccccacct acaagagttg
3301 tggttttcca tctgatcctt ccactgttgt caggagaaga agggggcctg gtatctcagg
3361 catattgttg aattcctgtt ctatcccttc tctatcccac cctgccttga cagtaggtta
3421 gcccataccc caaataactt tctatattag acacccccag ccagtttctg gctgcctgtc
3481 tttgctgcca tgttcttttt tacaagaagg aaagaaacaa ttcttgctat ttttttcata
3541 atttactatt tatgatgtat ttaagtgttt tattaaggac agagttctgt aaggggtggg
3601 agagaatatt tgagggaggg ctgggtctta gggaaaggaa tagggaatca acattttaat
3661 gaagtgtctc tatttgcttc tactttgtat cattcggaaa aggcaaatgc aatataaaag
3721 tgatatatgg ttttaatgta ataaactttt atcagttatt tagaaaaaga aaagaaaccg
3781 atggatcatt ttgacaacaa tgaagaaagg agacaggaac aaggaaaagt tgaggttatc
3841 ctgtaaagca tcttaaagca gaaagcaagg ctcttagttt gtaatttaat acacctgact
3901 gtaataattg taaaacaagg caggagtcaa ggaagggagg cagctgacga tgccatgtgt
3961 ctgtcagcat aaggcaaagg cagagcgagg tgaaaaggca tgaccaggaa agatgacatg
4021 cattgtcata aataaatgca gagagaaata attttttttg tgaaaacgaa cggacccata
4081 tactttataa acacagggta ccacttattc ttcaaactat ctaaactagt catggatgag
4141 ttttcaatgt ttttatatga gttctttcat gagtccaaaa tactatttct tacattgtgt
4201 ctttccataa cttatctgcc aataaagata cctgctaggg caaaaaaaaa aagaaaa
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