LOCUS BC028565 2453 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens coiled-coil domain containing 88C, mRNA (cDNA clone
IMAGE:3634458), partial cds.
ACCESSION BC028565
VERSION BC028565.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2453)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2453)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC028565.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: l Column: 13.
FEATURES Location/Qualifiers
source 1..2453
/db_xref="H-InvDB:HIT000040567"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3634458"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2453
/gene="CCDC88C"
/gene_synonym="DAPLE"
/gene_synonym="HkRP3"
/db_xref="GeneID:440193"
/db_xref="HGNC:HGNC:19967"
CDS <1..1116
/gene="CCDC88C"
/gene_synonym="DAPLE"
/gene_synonym="HkRP3"
/codon_start=1
/product="CCDC88C protein"
/protein_id="AAH28565.2"
/db_xref="GeneID:440193"
/db_xref="HGNC:HGNC:19967"
/translation="VRPCSASPSSEMVTLEEFLEESNRSSPTHDTPSCRDDLLSDYFR
KASDPPAIGGQPGPPAKKEGAKMPTNFVAPTVKMAAPTSEGRPLKPGQYVKPNFRLTE
AEAPPSVAPRQAQPPQSLSLGRPRQAPVPPASHAPASRSASLSRAFSLASADLLRASG
PEACKQESPQKLGAPEALGGRETGSHTLQSPAPPSSHSLARERTPLVGKAGSSCQGPG
PRSRPLDTRRFSLAPPKEERLAPLHQSATAPAIATAGAGAAAAGSGSNSQLLHFSPAA
APAARTKPKAPPRSGEVATITPVRAGLSLSEGDGVPGQGCSEGLPAKSPGRSPDLAPH
PGRALEDCSRGSVSKSSPASPEPGGDPQTVWYEYGCV"
BASE COUNT 532 a 743 c 671 g 507 t
ORIGIN
1 gtgcggccct gctcggcctc ccccagcagt gagatggtca ccttggagga gttcctggag
61 gagagcaacc gcagctcccc cacccatgac actcccagtt gccgggatga cctgctgagt
121 gactacttcc gaaaggccag cgatccccca gccatcggag gccaaccagg accacctgcc
181 aagaaagaag gggccaagat gcccaccaac tttgtggccc ccaccgtcaa aatggccgcc
241 cccacctcgg aggggaggcc gctgaagccc gggcagtacg taaagccaaa cttcagactg
301 actgaggccg aggccccacc cagcgtggcc ccgagacagg cccagcctcc ccagagcctg
361 tctctgggca gaccccggca ggctccggtg cccccagctt cccatgcacc tgccagccgc
421 agtgcctcct tgagccgggc cttcagcctg gcctcagctg accttctccg ggccagcggg
481 ccagaggcct gcaaacagga gtcccctcag aagctggggg ctcctgaggc cttagggggc
541 agagagacag gcagccacac cctgcaaagc cccgcacccc ccagctccca tagcctggcc
601 cgggagcgga ccccacttgt gggaaaggct ggcagctcct gtcagggccc aggtccccgc
661 agccggccgc tggacacgag gcgcttctcc ctggctcccc caaaggagga gaggctggcc
721 cccctgcatc agtctgccac agcccccgcc attgccactg caggtgctgg tgctgctgct
781 gctggcagtg gcagcaactc ccagctcctg cacttctcac ctgctgcagc cccggctgcc
841 aggaccaagc ccaaggcgcc cccacgctca ggggaggtgg ccaccatcac ccctgtccgg
901 gcagggctca gcctctcaga gggagacggg gtcccggggc agggctgcag tgaggggctt
961 ccggccaaga gcccaggtcg gtctcccgat ttggctcccc accccggccg ggccctggag
1021 gactgcagtc gagggagcgt ctcaaagagc agtccggcct ccccggagcc cggcggggat
1081 ccgcagaccg tgtggtatga gtacggctgt gtgtgactgt ctcgtggttg agctcgcaaa
1141 cctgaaaact actgacgcgc cttccgactc tcacggcctt ttctcttgct tgcctgcggt
1201 gccaggagag ggtttggaat gaggaaaggg gttcccacgc atttctgctg tttgttctgt
1261 gaatggaaac actgtgccaa gccccaagag gattacgctt ccaggtgtgt aacgtgtttt
1321 ctgtgtctgc cgcttccagc agctgatatc tttggaacaa ataatccacg tcagcatggg
1381 gaccaattcg gatgcaatga caaactgact tcccccaaag cagacactac tccagtatgt
1441 cccagtagaa cactcatttg caatgtgttg agctccgtta agcacacaca cactcacaca
1501 acaggctcac gaggctcagg cctggcgggt cagaaagccc actccctctc ccaaggccac
1561 tggatcccag gagaagccca gactggcgat actacaaagg tctccagggc ctggcagacc
1621 ccagagtcag gcctgctgtt aaaaagtgag agtgctgctg ttccattcct ggggtcccaa
1681 gcacttccct ttaccccagg acccagggca gcctgcaggg cagctggcgg tggccttggc
1741 catttgcccc cagcctccag ctggctcctg agctctgcac cagggggttt ggggaccaca
1801 caggcacctg ccttcctaga tttccctggc tcacttttct gcaaacactg gatctgccag
1861 gcctggggat tggggggcag gaaagaggcc cccatccagc cccctccagg ccagtgtgca
1921 cagtgcaccg aggggtcatc cgcacagagc gaggtgcaag ctcgatgtgt aacctggctg
1981 cggcacccga catccccggt ctcggggtgt tgatttattt ctgaataact ttttgggtat
2041 agaaaccaat tttttttaat atatgacatg tatatgtaca cactcatgtg aaatatgtat
2101 actttggggg gatctattta tgttccagtg ggagtcactc tcttctgtcg ggaatcttat
2161 ctgctgcttt gtgtctttgg tcagattcct gacaatttag tttcctgttg taaaggtgct
2221 tttcctgggg tgaactaaac ctattgattt ttttttttta agattttttt ttccttttga
2281 tttaatatac tgagaaagaa atgggagact tttgaatgtt aacaagatcc attttaggag
2341 tgtttggggt tgtgtattaa atagccattc attctggaac tcaaggacag gactgtaata
2401 aaatggaatg gaaccgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//