LOCUS BC028424 4060 bp mRNA linear HUM 09-SEP-2005
DEFINITION Homo sapiens ring finger and FYVE-like domain containing 1, mRNA
(cDNA clone MGC:33857 IMAGE:4826613), complete cds.
ACCESSION BC028424
VERSION BC028424.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4060)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4060)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: o Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62865648.
FEATURES Location/Qualifiers
source 1..4060
/db_xref="H-InvDB:HIT000040564"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33857 IMAGE:4826613"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4060
/gene="RFFL"
/gene_synonym="RNF189"
/gene_synonym="RNF34L"
/db_xref="GeneID:117584"
CDS 204..1187
/gene="RFFL"
/gene_synonym="RNF189"
/gene_synonym="RNF34L"
/codon_start=1
/product="RFFL protein"
/protein_id="AAH28424.1"
/db_xref="GeneID:117584"
/translation="MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLE
PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELM
KMKVKDLRDYLSLHDISTEMCREKGELVLLVLGQQPVISQEDRTRASTLSPDFPEQQA
FLTQPHSSMVPPTSPNLPSSSAQATSVPPAQVQENQQSIDSEDSFVPGRRASLSDLTD
LEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLGGAVPSGLE
ENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS"
BASE COUNT 1016 a 1002 c 931 g 1111 t
ORIGIN
1 agcggggggg gagggggggc cgacttcctg gggccgcccg tgaggatgtc gcgaccgccc
61 ccgggtgccc ctcagcccca gagacgccgc cgcggcggag tccgcagcct ccctgcctga
121 ggcgtccgcg gccgggatcc ggcccctccc ctcgcctcct ctcctaggtg ccggccggga
181 gggcggccgc agcagatttt atcatgtggg caacctgctg caactggttc tgcctggatg
241 gacagcctga ggaggtccca ccaccccagg gagccaggat gcaggcctat tccaaccctg
301 ggtacagctc cttcccttcc ccaacaggct tggaaccaag ctgcaagtcc tgtggggctc
361 actttgcaaa cacggccagg aagcagacct gcttggactg taagaaaaat ttttgcatga
421 cctgttcgag ccaagtaggg aatgggcccc gcctctgcct tctctgccaa cggtttcgag
481 ctacagcctt tcagcgagag gagctcatga agatgaaggt gaaggacttg agggactatc
541 tcagcctcca tgacatctct accgaaatgt gccgggagaa aggagagctg gtgctcttgg
601 tccttggcca gcagcctgta atctcccagg aggacaggac tcgtgcctcc accttgtccc
661 cagactttcc tgagcagcag gccttcctga cccagcctca ctccagcatg gttccaccta
721 cctcacccaa cctcccctct tcatctgcac aagccacctc tgttccccca gcccaggttc
781 aggagaatca gcagtctatt gactcagagg acagctttgt cccaggccga agggcctctc
841 tgtctgacct gactgacctg gaggacattg aaggcctgac agtgcggcag ctgaaagaga
901 tcttggctcg caactttgtc aactacaagg gctgctgtga gaagtgggag ctgatggaga
961 gagtgacccg gctatacaag gatcagaaag gactccagca cctgggggga gcagtaccat
1021 caggcttgga ggagaacctg tgtaagatct gcatggactc acccattgac tgtgttcttc
1081 tggagtgtgg ccacatggta acctgtacca agtgtggcaa gcgcatgaat gaatgtccca
1141 tctgccggca gtatgtaatc cgagctgtgc atgtcttccg gtcctgagag cttgcatcgg
1201 tttcttcagt gccttacagg gaaatagcct ggggtgtctg ggctcagggt tggccagctt
1261 gcagaggagc aagctagtag aaatattgca gggttcccaa aaccaggtca agcaagatgc
1321 catgtcaccc ctgagcatgc ctgtcttccc aggggtgtac ctcttggctg gcaaagccca
1381 aggccagtgg gaacttgtat aaatcacatg ggtatgttct tggttcagtg atcttggagt
1441 gatgatggta actgatgaac agagaacttt ccagaacttg ggtcctgtct tcctccctga
1501 acctagacag tttcacccct cctcctgtac ccaacccatc cccaccccat atgggagatg
1561 cttgcccatg tgtttcatca atcagaagtc ctcctcccca gcacattcgg atttaaattt
1621 ctggtctctc cggctttctg tgctttaact atctttgcta aagtctcttg ctacattgcc
1681 taaatccatt tgtttctttg gaccaaaaat gttagtttac cagaccgata gtggtcctta
1741 ggacagattt tagaccagta aacttatctt tggtgagaaa tgaaatacaa atgctataga
1801 aaaatttcaa agttgttaaa agccacttca ttaaatgctg ggattggaag ctgttggtct
1861 cctgacctga ctctgggagc caacaaaaca tcaggctccc aaactgctgg gaaatttgtt
1921 tctgtctgca agggatagtg cgtgcataat ccctgctgct gcttctcttg ggacctgatt
1981 tgcaccatcc ttagtttatg cggaaagggg aagcaatggg tggaggcagt ggccttctcc
2041 ttaattttgg cttggcttct gatccttttc ccaactagaa gtcttaagcc acttttcgct
2101 gaaaatgaaa tccctccctt atccatggta gttttaaatt tggtttcatt gaagaaatag
2161 atttaggcaa agagcctgtg ctcttctctg gccagactgc tgttgaagtt cctggagagc
2221 aaatgttaag acagagcact taagagcttt caggaggtac tgaatgagac tggattctgt
2281 tgtaagccga cagttcaagt ctttatttcc caggttggtg gggagtgagg agaccctact
2341 ttcattccct ttcctagccc actgattttt gggggcaggt cagggagaaa gcattttttt
2401 tttttttttt gagtctcact ctgttgccca ggctggagtg cagtggtaca gtcttggctt
2461 actgcaacct ccacctccca ggttcaagct attctcctgc cttagcctcc agagtagctg
2521 ggattatagg cgcccaccac cacaccaggc taatttttgt atttttagta gagacggggt
2581 tttaccatgt tcaccaggct ggtcttgaaa tcttgacctt atgatccgcc cgcctcagct
2641 tcccaaagtg ctgggattac aggcgtgagc caccacaccc agcaggagaa accattttct
2701 aggctcttta ggaaggacca tgcaatgagt aggtgatgta tttgagccct cacagtcttt
2761 acacccctag aggagctgga ggacttaaga gtttgctgca gaagcgtggc caagcacaaa
2821 acacatgatc aggaaagcag agtgttttcc cattaccaat ggatgaacta tgcaaaccct
2881 aaacgccttg gcagacacct cccacccctt acccctccca tgcagctgaa aaatctgaga
2941 ctagaaccaa tcatgactct ggatggcaga gggaaacctc taaagggact tattacattg
3001 gtacagacat atttatgctt tcttccatca ccaaccacta aacccctttg gaggaatgaa
3061 ataactgcat aaactagtca actgaacact gggccactta cctcaatgtt atacaaagtc
3121 ctggatgatt tgattctgaa ccacagcctt tgcaggagtt gggggaatca gatttgctca
3181 tgaagacatc cctttccact tttgtcatgg gcagtaaata ctatagttta caatgcctac
3241 caattagcaa aggatcattc cttcagctac tcagttcctc tgtaaaacag gtctatgtat
3301 gtgcaattca gctaagatct agcagtaact taagggcaga agctggctct ctacttacaa
3361 cctgctttct ctgctgaagc cttacctcct cttcagtttc cctcctagac acaaatcgaa
3421 aataatatac tgatagctgg ttagtaacct cagtaagaat taaaactgag gttgtttact
3481 cattttgcct ttaaatcttt tatccccttt tggtgaaggt ttccctttag gaaaaaaggt
3541 gtcaaacaac cctgattttt tttttttttg catcattttt attacaccaa attaaagttg
3601 ggagttccaa gatcccattc cagttaatat ttaaccaagg tctaaaattt gatttttttt
3661 aaatctttga atcctccctt ctgcccctca tggatccttg gttttaatga tatggaaaca
3721 tctaattctt agaattattc cgtagctttt gctgattact ctgagatttc agttaggact
3781 tgtttcaaaa gacagatagc tgactggttc ataatacatt ggaatagttg gatccaaact
3841 aataagaata agctgtacag gaactagtgc tcaatataca ttgtataaat ttgtggaaat
3901 ctcttggatg tgaattgtta cttcaagtgg cttttattaa gattttctca gacttacttg
3961 gaggttaaag caaacccaaa tgtgtattat tttgttacag agctctgctt tataattttg
4021 taataaagtt tcaatacaga caccaaaaaa aaaaaaaaaa
//