LOCUS BC028408 3102 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens homeodomain interacting protein kinase 1, mRNA (cDNA
clone MGC:33548 IMAGE:4821915), complete cds.
ACCESSION BC028408
VERSION BC028408.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3102)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: i Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38201641.
FEATURES Location/Qualifiers
source 1..3102
/db_xref="H-InvDB:HIT000040558"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33548 IMAGE:4821915"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3102
/gene="HIPK1"
/gene_synonym="KIAA0630"
/gene_synonym="MGC26642"
/gene_synonym="MGC33446"
/gene_synonym="MGC33548"
/gene_synonym="Myak"
/gene_synonym="Nbak2"
/db_xref="GeneID:204851"
/db_xref="HGNC:HGNC:19006"
/db_xref="MIM:608003"
CDS 200..2710
/gene="HIPK1"
/gene_synonym="KIAA0630"
/gene_synonym="MGC26642"
/gene_synonym="MGC33446"
/gene_synonym="MGC33548"
/gene_synonym="Myak"
/gene_synonym="Nbak2"
/codon_start=1
/product="homeodomain interacting protein kinase 1"
/protein_id="AAH28408.1"
/db_xref="GeneID:204851"
/db_xref="HGNC:HGNC:19006"
/db_xref="MIM:608003"
/translation="MWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLLSA
GTKTTRFFNRDPNLGYPLWRLKTPEEHELETGIKSKEARKYIFNCLDDMAQVNMSTDL
EGTDMLAEKADRREYIDLLKKMLTIDADKRITPLKTLNHQFVTMTHLLDFPHSNHVKS
CFQNMEICKRRVHMYDTVSQIKSPFTTHVAPNTSTNLTMSFSNQLNTVHNQASVLASS
STAAAATLSLANSDVSLLNYQSALYPSSAAPVPGVAQQGVSLQPGTTQICTQTDPFQQ
TFIVCPPAFQTGLQATTKHSGFPVRMDNAVPIVPQAPAAQPLQIQSGVLTQGSCTPLM
VATLHPQVATITPQYAVPFTLSCAAGRPALVEQTAAVLQAWPGGTQQILLPSTWQQLP
GVALHNSVQPTAMIPEAMGSGQQLADWRNAHSHGNQYSTIMQQPSLLTNHVTLATAQP
LNVGVAHVVRQQQSSSLPSKKNKQSAPVSSKSSLDVLPSQVYSLVGSSPLRTTSSYNS
LVPVQDQHQPIIIPDTPSPPVSVITIRSDTDEEEDNKYKPSSSGLKPRSNVISYVTVN
DSPDSDSSLSSPYSTDTLSALRGNSGSVLEGPGRVVADGTGTRTIIVPPLKTQLGDCT
VATQASGLLSNKTKPVASVSGQSSGCCITPTGYRAQRGGTSAAQPLNLSQNQQSSAAP
TSQERSSNPAPRRQQAFVAPLSQAPYTFQHGSPLHSTGHPHLAPAPAHLPSQAHLYTY
AAPTSAAALGSTSSIAHLFSPQGSSRHAAAYTTHPSTLVHQVPVSVGPSLLTSASVAP
AQYQHQFATQSYIGSSRGSTIYTGYPLSPTKISQYSYL"
BASE COUNT 797 a 838 c 656 g 811 t
ORIGIN
1 agcggatagt aggcaatatt tatgtgtcat ttattattat tgctattagt gttacctatt
61 attttctttt tgaacccact tattgcctaa ttagtcatag tttgacaatt gcccttgtat
121 tccaccatgt caaatataaa tttacataga tgaagctcct gaaattattc ttgggttacc
181 attttgtgaa gctattgata tgtggtcact gggctgtgtg atagctgagc tgttcctggg
241 atggcctctt tatcctggtg cttcagaata tgatcagatt cgttatattt cacaaacaca
301 aggcttgcca gctgaatatc ttctcagtgc cggaacaaaa acaaccaggt ttttcaacag
361 agatcctaat ttggggtacc cactgtggag gcttaagaca cctgaagaac atgaactgga
421 gactggaata aaatcaaaag aagctcggaa gtacattttt aattgcttag atgacatggc
481 tcaggtgaat atgtctacag acctggaggg aacagacatg ttggcagaga aggcagaccg
541 aagagaatac attgatctgt taaagaaaat gctcacaatt gatgcagata agagaattac
601 ccctctaaaa actcttaacc atcagtttgt gacaatgact caccttttgg attttccaca
661 tagcaatcat gttaagtctt gttttcagaa catggagatc tgcaagcgga gggttcacat
721 gtatgataca gtgagtcaga tcaagagtcc cttcactaca catgttgccc caaatacaag
781 cacaaatcta accatgagct tcagcaatca gctcaataca gtgcacaatc aggccagtgt
841 tctagcttcc agttctactg cagcagctgc tactctttct ctggctaatt cagatgtctc
901 actactaaac taccagtcag ctttgtaccc atcatctgct gcaccagttc ctggagttgc
961 ccagcagggt gtttccttgc agcctggaac cacccagatt tgcactcaga cagatccatt
1021 ccaacagaca tttatagtat gtccacctgc gtttcaaact ggactacaag caacaacaaa
1081 gcattctgga ttccctgtga ggatggataa tgctgtacca attgtacccc aggcaccagc
1141 tgctcagcca ctacagattc agtcaggagt tctcacgcag ggaagctgta caccactaat
1201 ggtagcaact ctccaccctc aagtagccac catcacaccg cagtatgcgg tgccctttac
1261 tctgagctgc gcagccggcc ggccggcgct ggttgaacag actgccgctg tactgcaggc
1321 gtggcctgga gggactcagc aaattctcct gccttcaact tggcaacagt tgcctggggt
1381 agctctacac aactctgtcc agcccacagc aatgattcca gaggccatgg ggagtggaca
1441 gcagctagct gactggagga atgcccactc tcatggcaac cagtacagca ctatcatgca
1501 gcagccatcc ttgctgacta accatgtgac attggccact gctcagcctc tgaatgttgg
1561 tgttgcccat gttgtcagac aacaacaatc cagttccctc ccttcgaaga agaataagca
1621 gtcagctcca gtctcttcca agtcctctct agatgttctg ccttcccaag tctattctct
1681 ggttgggagc agtcccctcc gcaccacatc ttcttataat tccttggtcc ctgtccaaga
1741 tcagcatcag cccatcatca ttccagatac tcccagccct cctgtgagtg tcatcactat
1801 ccgaagtgac actgatgagg aagaggacaa caaatacaag cccagtagct ctggactgaa
1861 gccaaggtct aatgtcatca gttatgtcac tgtcaatgat tctccagact ctgactcttc
1921 tttgagcagc ccttattcca ctgataccct gagtgctctc cgaggcaata gtggatccgt
1981 tttggagggg cctggcagag ttgtggcaga tggcactggc acccgcacta tcattgtgcc
2041 tccactgaaa actcagcttg gtgactgcac tgtagcaacc caggcctcag gtctcctgag
2101 caataagact aagccagtcg cttcagtgag tgggcagtca tctggatgct gtatcacccc
2161 cacagggtat cgagctcaac gcggggggac cagtgcagca caaccactca atcttagcca
2221 gaaccagcag tcatcggcgg ctccaacctc acaggagaga agcagcaacc cagccccccg
2281 caggcagcag gcgtttgtgg cccctctctc ccaagccccc tacaccttcc agcatggcag
2341 cccgctacac tcgacagggc acccacacct tgccccggcc cctgctcacc tgccaagcca
2401 ggctcatctg tatacgtatg ctgccccgac ttctgctgct gcactgggct caaccagctc
2461 cattgctcat cttttctccc cacagggttc ctcaaggcat gctgcagcct ataccactca
2521 ccctagcact ttggtgcacc aggtccctgt cagtgttggg cccagcctcc tcacttctgc
2581 cagcgtggcc cctgctcagt accaacacca gtttgccacc caatcctaca ttgggtcttc
2641 ccgaggctca acaatttaca ctggataccc gctgagtcct accaagatca gccagtattc
2701 ctacttatag ttggtgagca tgagggagga ggaatcatgg ctaccttctc ctggccctgc
2761 gttcttaata ttgggctatg gagagatcct cctttaccct cttgaaattt cttagccagc
2821 aacttgttct gcaggggccc actgaagcag aaggtttttc tctgggggaa cctgtctcag
2881 tgttgactgc attgttgtag tcttctcaaa gtttgcccta tttttaaatt cattattttt
2941 gtgacagtaa ttttggtact tggaagagtt cagatgccca tcttctgcag ttaccaagga
3001 agagagattg ttctgaagtt accctctgaa aaatattttg tctctctgac ttgatttcta
3061 taaatgcttt taaaaacaaa aaaaaaaaaa aaaaaaaaaa aa
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