LOCUS BC028403 3087 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens family with sequence similarity 19 (chemokine (C-C
motif)-like), member A2, mRNA (cDNA clone MGC:33519 IMAGE:4818605),
complete cds.
ACCESSION BC028403
VERSION BC028403.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3087)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3087)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: g Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52486623.
FEATURES Location/Qualifiers
source 1..3087
/db_xref="H-InvDB:HIT000091590"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33519 IMAGE:4818605"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3087
/gene="FAM19A2"
/gene_synonym="DKFZp761E1217"
/gene_synonym="TAFA-2"
/gene_synonym="TAFA2"
/db_xref="GeneID:338811"
/db_xref="HGNC:HGNC:21589"
CDS 532..927
/gene="FAM19A2"
/gene_synonym="DKFZp761E1217"
/gene_synonym="TAFA-2"
/gene_synonym="TAFA2"
/codon_start=1
/product="family with sequence similarity 19 (chemokine
(C-C motif)-like), member A2"
/protein_id="AAH28403.1"
/db_xref="GeneID:338811"
/db_xref="HGNC:HGNC:21589"
/translation="MSKRYLQKATKGKLLIIIFIVTLWGKVVSSANHHKAHHVKTGTC
EVVALHRYCNKNKIEERSQTVKYSCFPGQVAGTTRAAPSCVDASIVEQKWWCHMQPCL
EGEECKVLPDRKGWSCSSGNKVKTTRVTH"
BASE COUNT 939 a 555 c 643 g 950 t
ORIGIN
1 agcgggggtt ggccttaaaa gcaaacaaat cagagatgga ataagagcgg taattgcagc
61 aagaccgcct tgattcttgc agtccaggga gctgagcgca ccgcgcgcat ccggcgagga
121 caggaggcga ccgcgggcgc tgccaagggc tgcgggactt tggcttttcc tcagtaaaca
181 aatcttttga ttactttgac actgtggaat aaagaagcgg ggagaaggat caggctcacc
241 ttcacccgct tcagggggat tccagcttgg atgtcagatt cctgaaccgt ctttgccatc
301 ggaggaggaa acacatccac acacgcgcgc gcacactcgc acgctcaggg ccacactcac
361 acgccgccct ccacgatcac acagcaccag acttcggttc cctatgcccc tggatggtga
421 cggcggattg gcatcttgga agcgatgcga gagcgataag gctggcgccg gcccgcaaaa
481 gctgcaggag catcgctagg tgttgccgcc accgggaagc ggggctgcag gatgagtaag
541 agatacttac agaaagcaac aaaaggaaaa ctgctaataa taatatttat tgtaaccttg
601 tgggggaaag ttgtatccag tgcaaaccat cataaagctc accatgttaa aacgggaact
661 tgtgaggtgg tggcactcca cagatactgt aataagaaca agatagaaga acggtcacaa
721 acagtcaagt actcctgctt ccctgggcag gtggcaggca ccacgcgagc tgctccatca
781 tgtgtggatg cttcaatagt ggaacagaaa tggtggtgcc atatgcagcc atgtctagag
841 ggagaagaat gtaaagttct tccggatcgg aaaggatgga gctgttcctc tgggaataaa
901 gtcaaaacaa ctagggtaac ccattaaccc aggagaaatc aagtgatcct caaggctgat
961 gacattgaac atgcgcatag aaacttaact caactcctga ggtgatcttg aagattttta
1021 taccacttga aagaggcgct caatagtcta tttccaaggg atttcatggc ctcttcttga
1081 aatcaagact ttttaaaagt cagacatgaa cttgcatgtc atgaagattt cagcagattt
1141 gaactgtgtt caacttgtaa attgttaaaa gaatttgaag tcactgtctg aggagctggt
1201 gaagagttgt ttttttcagg gtgatgttag agacagtcac cttttgagtt attggctcca
1261 gatgtgacta cttttcttgt ttctgcaagc tgtatcccaa gtgcactgtc cttctgtcct
1321 ggatgtgttc ctgggtccta tgttcatttg ctagtgggac tacacatggc tttaatgaca
1381 tttcctttga gaacttttcc tctggcatgg tgtagactga gacaatttta tttatatcct
1441 aatcttggag ctcagaaagc ctacatgttt taacatctta aagttgcttt tgttaaagga
1501 atggaaatat atatccattg gtaataatgt tggcaagtaa tagttatctg aataaatcaa
1561 tcatataaga atgtatagac aagctgacat atttccctaa ggctaacaac accctgctga
1621 agctctttgt caaataggta gtagttagaa ctggattgcc attttcatta tataatactt
1681 tgtacctcta gagcactctc cctttctgtt tttttttaag tgagcttttc tttaattttt
1741 tatgtttact tattcccttc acagaaatca gcagtgagca gtcaagttaa tgggtagcct
1801 tcagtttcaa aaaaattgac agggatgcat gtgagtttct gatttcttag cttgaacatt
1861 attcacttag atttcttcca gtatttttta aaaaactgtc ctatctcatt ttaaaagact
1921 ttcttttgct tgatcccaat gactgtttga atgcttatat atttgttcaa tctgttgata
1981 gaaaaaattg ttcattttcc tcagtctcaa atttataaat atttgcttac agttttccta
2041 ttcaaacaat ttgttaggcc aatattttgt gacatttttg tagcgatttt aacgtttatg
2101 gttttggttc tacaggaaag tcataaatat ttaaaggcct taaacatgta tgtacttttt
2161 ttttctaagt tatagaatgt ataattttgt actacattta ttttgtttca tttgtgatat
2221 gaagggagag aagaaagaaa agtgcatagc cattctgtaa caatattgtg taaacctata
2281 gtttgaagga atgcaaggag aaggatttct gtgttttact cattttaggc tgttcagaag
2341 atgcttcaaa aattgtcctg ttagaatttc catcatggaa ggtggtatgg aagaaggtat
2401 ggaaatactt tgtattctaa aaactcactg acgtggtcag ttagacatac gttggtttcc
2461 aggatagagg cccatatatc ctggggagct ttggtctatt agtttgtgac aatattcaaa
2521 ggccaaaaca ctactcagac actttcctgg gaagagcaac taaaaatgta aaattggtta
2581 aaaataaaat ctgaaaagta tgtatctcac attgaactaa aatccactgt ctcataagtt
2641 catggaatga aatggctttc tgcctccatt ttaatcatgc ataaaatgaa ttagatggct
2701 ttgagtggat tttcacaatg gctcaagact atatgaaatt ataaaaaaaa agttgccctg
2761 gggtttctgc atcaattaga atatcattaa tttctttgta accaagtgaa aaactatact
2821 ttttggaaat tatgaatttg tcctaggttt gtttgagatt tgaaattata catcatgctt
2881 ctcatttttt aaactatgtt ctttaaatca acactggaaa ctctgtatta tatacaagtg
2941 taatacatgc atataataga aaaaaaacat ggaatttcaa atatactaac tagattatcc
3001 ccagtagatt aatgttgtga ctattcagaa aaggtgaata aaattgggat ataaaatgga
3061 ctctctttca taaaaaaaaa aaaaaaa
//