LOCUS BC028386 2478 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens ribosomal RNA processing 1 homolog B (S. cerevisiae),
mRNA (cDNA clone MGC:33175 IMAGE:4821672), complete cds.
ACCESSION BC028386
VERSION BC028386.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2478)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2478)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028386.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57863268.
FEATURES Location/Qualifiers
source 1..2478
/db_xref="H-InvDB:HIT000040547"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33175 IMAGE:4821672"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2478
/gene="RRP1B"
/gene_synonym="Nnp1"
/gene_synonym="RRP1"
/db_xref="GeneID:23076"
/db_xref="HGNC:HGNC:23818"
/db_xref="MIM:610654"
CDS 120..2396
/gene="RRP1B"
/gene_synonym="Nnp1"
/gene_synonym="RRP1"
/codon_start=1
/product="ribosomal RNA processing 1 homolog B (S.
cerevisiae)"
/protein_id="AAH28386.1"
/db_xref="GeneID:23076"
/db_xref="HGNC:HGNC:23818"
/db_xref="MIM:610654"
/translation="MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETG
GFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTM
NREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQS
PNGVRFHFIDIYLDELSKVGGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFE
AIVDQSPFVPEETMEEQKTKVGDGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDG
LSDERGRDDCGTFEDTGPLLQFDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDL
SEGSSISQLSFAEDISADEDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDS
ESSLQKRRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGPKALKARVAEPGAEA
TSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQ
GPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQ
RRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGS
SGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSK
KVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPASSPLVA
KKPLTTTPRRRPRAMDFF"
BASE COUNT 696 a 638 c 705 g 439 t
ORIGIN
1 ggcgtcgccg ccttctgtgc agtcgcggcc cgggcggacg gtggctggct gctccgcagc
61 gctcggctgg ctgcagcggc accgcgggtt gcgcggccgg ggatgctcca gcgggcgcga
121 tggcccccgc catgcagccg gccgagatcc aatttgccca gcggctggcg tccagcgaga
181 agggcatccg ggaccgagcg gtgaagaagc tgcgccagta catcagcgtg aagacgcaga
241 gggagacagg aggtttcagt caggaagaac ttctgaaaat ctggaagggg ctcttctact
301 gcatgtgggt gcaggatgaa ccccttctac aggaagagct cgccaacacc attgcacagc
361 tagtccatgc tgttaacaac tcagcggctc aacacctgtt cattcagacc ttttggcaaa
421 ccatgaatcg agaatggaaa ggaatagaca ggctacgcct ggacaaatac tatatgctga
481 ttcgtctggt cctgaggcag tcctttgaag tcttgaagcg aaatggctgg gaagaaagcc
541 gaatcaaggt tttcttggat gtcctgatga aggaggtcct gtgtcctgag agtcagtctc
601 ctaatggagt gagattccac ttcattgata tttacctgga tgaactctcc aaagtcgggg
661 ggaaggagct tttagcagat cagaatctca agtttatcga tccattctgc aaaattgctg
721 caaagacgaa ggaccacacc ctggtacaga ccatagctcg gggtgtcttc gaagctatcg
781 tagatcagtc tccttttgtg cctgaagaga cgatggagga acagaagaca aaagtgggtg
841 atggtgacct ctctgctgag gagatacctg aaaatgaggt atccttgaga agagctgtca
901 gtaaaaagaa gacagcactg ggcaaaaacc attccagaaa agatggactc agtgatgaaa
961 gaggaagaga tgactgtgga acctttgagg acacagggcc ccttctccag tttgactata
1021 aggctgttgc tgatcgactc ctggaaatga ccagcaggaa gaacacgccc cacttcaaca
1081 ggaagcgcct ctccaaactc atcaagaaat tccaagacct ttctgaagga agcagtatat
1141 ctcaactcag ttttgcggag gacatttctg ctgatgaaga tgaccaaatc ctcagtcaag
1201 gaaagcataa gaagaaagga aataaacttt tagagaaaac taacttggaa aaggagaaag
1261 gaagcagagt cttttgtgta gaggaagagg acagtgaaag cagtcttcaa aagagaagaa
1321 ggaagaagaa gaagaagcac cacctgcagc ctgaaaatcc aggcccaggg ggtgcagccc
1381 cgtccctgga acagaaccgg ggcagggagc ccgaggcctc tgggccgaaa gccctgaagg
1441 cacgtgtggc cgagccaggt gcagaggcca cgtccagcac tggggaggag agtggctccg
1501 agcatcctcc agccgtcccc atgcacaata aaaggaaacg gccacggaag aagagcccga
1561 gggcccacag ggaaatgttg gaatcagcag tgttgccccc agaggacatg tctcagagtg
1621 gcccgagtgg cagtcatcct cagggaccta gagggtcccc gacaggtgga gcccaactcc
1681 taaaaaggaa gcggaaactt ggagttgtgc ccgtcaatgg cagtggcctg tccacgccgg
1741 cctggcctcc attgcagcag gaaggccctc ccacaggccc cgcagagggg gcgaacagcc
1801 acaccacgct gccccagcgc aggaggctgc agaaaaagaa ggcagggccc ggcagcctgg
1861 agctctgtgg cctgcccagc cagaaaacag caagtttgaa aaagaggaag aaaatgagag
1921 tgatgtcaaa cttggtggag cacaacgggg tgctggagtc cgaagctggg caaccccagg
1981 ctctgggaag cagtgggact tgcagttccc tgaagaagca gaagctgagg gcagagagcg
2041 actttgtgaa gtttgacacc cccttcttac caaagcccct gttcttcaga agagccaaga
2101 gcagcactgc cacccaccct ccaggccctg ccgtccagct aaacaagaca ccatccagct
2161 ccaagaaagt cacctttggg ctgaacagaa acatgactgc cgaattcaag aagacagaca
2221 agagtatctt ggtcagtccc acgggccctt ctcgagtggc cttcgaccct gaacagaagc
2281 ccctccacgg ggtgctgaag acccccacca gctcacctgc cagctcaccc ctggtggcca
2341 agaagcccct gaccaccaca ccaaggagaa ggcccagggc tatggatttc ttctgaggag
2401 cagcagagtc ccttgtaaaa gactgctttt gtacagaatg cgctataaat tataccttta
2461 agaaaaaaaa aaaaaaaa
//