LOCUS BC028382 2805 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 45 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:33071 IMAGE:4818323), complete cds.
ACCESSION BC028382
VERSION BC028382.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2805)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2805)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC028382.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: g Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18105062.
FEATURES Location/Qualifiers
source 1..2805
/db_xref="H-InvDB:HIT000050947"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33071 IMAGE:4818323"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2805
/gene="VPS45"
/gene_synonym="H1"
/gene_synonym="H1VPS45"
/gene_synonym="VPS54A"
/gene_synonym="VSP45"
/gene_synonym="VSP45A"
/db_xref="GeneID:11311"
/db_xref="HGNC:HGNC:14579"
/db_xref="MIM:610035"
CDS 547..2259
/gene="VPS45"
/gene_synonym="H1"
/gene_synonym="H1VPS45"
/gene_synonym="VPS54A"
/gene_synonym="VSP45"
/gene_synonym="VSP45A"
/codon_start=1
/product="vacuolar protein sorting 45 homolog (S.
cerevisiae)"
/protein_id="AAH28382.1"
/db_xref="GeneID:11311"
/db_xref="HGNC:HGNC:14579"
/db_xref="MIM:610035"
/translation="MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEI
LQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVI
SKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQ
GLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDR
CDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNM
YLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTV
VGELSRLVSERNLLEVSEVEQELACQNDHSSALQNIKRLLQNPKVTEFDAARLVMLYA
LHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITK
QFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIG
GATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRS
ASRR"
BASE COUNT 793 a 640 c 661 g 711 t
ORIGIN
1 actgtttcgc aaataccgcg tgtgatttat taaatgccgt ctctccgagt cccaagcggc
61 cgggagcatt atgccacctc ccttgccctc atctctcact gccatgcaag aaagcgttaa
121 tggcaaatag ggcacgtagc cacactccgt cgttcctgct tccaagcaaa ccttgtgcca
181 ggttcctcat ttcgcgaggc tccactctct tgggcttcag gctgccgctg ggcctccagc
241 accaaagggc aataggggtc tgagagtccg ggcctcaggc atcttcaggc cgcaggtggg
301 tggagaataa cgcccgcgcg tggcagcggc ccaggccgtc tcagccggat ttttccatcc
361 ccggggtagg cttggtcccc tgtacactcc agcggaacta caactcccag caccgtggct
421 gcccggactc ccggaagccg aatcccggct gggaggaagc agctgagacc cggccaacag
481 actgggggtt aatttagcca gaaaaggggg cgggaagggc tgtagggtac ttgtcaattc
541 gccgccatga acgtggtttt tgctgtgaag cagtacattt ccaaaatgat agaggacagc
601 gggcctggta tgaaagtact tctcatggat aaagagacga ctggcatagt gagtatggta
661 tacacacaat cggagattct acagaaggaa gtgtacctct ttgaacgcat tgattctcaa
721 aatcgagaga tcatgaaaca cctgaaggca atttgttttc ttcgacctac aaaggagaat
781 gtggattata ttattcagga gctccgaaga cccaaataca ctatatattt catttatttc
841 agtaatgtga tcagcaagag tgacgtgaag tcattggctg aagctgatga acaggaagtt
901 gtggctgagg ttcaggaatt ttatggtgat tacattgctg tgaacccaca tttgttttcc
961 ctcaatattt tgggttgctg ccagggtcga aattgggatc cagcccagct atctagaaca
1021 actcaagggc ttacagctct ccttttatct ctgaagaagt gtcccatgat tcgttatcag
1081 ctctcatcag aggcagcaaa gagacttgca gagtgcgtta agcaagtgat aactaaagaa
1141 tatgaactgt ttgaattccg tcggacagag gttcctccat tgctccttat tttagatcgc
1201 tgtgatgatg ccatcacccc attgctaaac cagtggacat atcaggccat ggtccacgaa
1261 ctactaggca taaacaacaa tcggattgat ctttccagag tgccgggaat cagtaaagac
1321 ttaagagaag tggtcctatc tgctgaaaat gatgaattct atgctaataa tatgtacctg
1381 aactttgctg agattggtag caatataaag aatctcatgg aagattttca gaagaagaaa
1441 ccaaaagaac agcaaaaact agaatcaata gcagacatga aggcgtttgt tgagaattat
1501 ccacagttca agaaaatgtc tgggactgtt tcaaagcatg tgacagtggt tggagaactg
1561 tctcgattgg tcagtgaacg gaatctgctg gaggtttcag aggttgagca agaactggcc
1621 tgtcaaaatg accattctag tgctctccag aatataaaaa ggcttctgca gaaccccaaa
1681 gtgacagagt ttgatgctgc ccgcctggtg atgctttatg ctttacatta tgagcgacac
1741 agcagcaata gcctgccagg actaatgatg gacctcagga ataaaggtgt ttctgagaag
1801 tatcgaaagc tcgtgtctgc agttgttgaa tatggtggta aacgagtcag aggaagtgac
1861 ctcttcagcc ccaaagatgc tgtggctatc accaaacaat tcctcaaagg actgaaggga
1921 gtagaaaatg tatatacaca gcatcaacct ttcctacatg aaaccctgga tcatctcatc
1981 aaaggaaggc ttaaggaaaa cctatatcct tatttaggcc ccagcacact cagagacaga
2041 cctcaggata tcattgtgtt tgtaattgga ggagccacct atgaagaggc tctaacagtt
2101 tataacctga accgcaccac tcctggagtg aggattgtcc tgggaggcac cacagtgcac
2161 aacacgaaaa gtttcctaga ggaagttctg gcttctggac tgcacagccg aagcaaggag
2221 agctctcaag tcacatcaag gtcagcgagc agaagatgaa acggtggttg ggggaagggc
2281 acagcttcct ctcttgtccc cactacaggt tttccctact aaacaaaggt gttggagagc
2341 agctttgggt tctgtgctgg ttgttagaac tcatctccag gtagcccacg gatacgtggt
2401 tggcacagac acaagactcc cagagttgtc ctaacaataa gtctgagccc atctcaaccc
2461 acttttctcc ggtagtcttt atgtatctgt tagcacaatc acttcagtta ctgatgaatt
2521 ttgttgggat ctgacttggg gaaagggtta tcagagccta gaggggctta aaaagtaatc
2581 atttgatgta cataccacac tccttggctt cctttctctt cccttaaccc tttctgcttt
2641 tcattaacca cattcctgca caactcattt ctgaaaacct accatgtttc tttacagagc
2701 catccaaaaa ttttttgtcc ctacatagca attttctgtg gcactgagaa accatgtatg
2761 accacaataa aaatccattt tgtgaaagga aaaaaaaaaa aaaaa
//