LOCUS BC028375 3856 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens PDZ domain containing 8, mRNA (cDNA clone MGC:27107 IMAGE:4837939), complete cds. ACCESSION BC028375 VERSION BC028375.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3856) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3856) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 34 Row: m Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31341089. FEATURES Location/Qualifiers source 1..3856 /db_xref="H-InvDB:HIT000050945" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:27107 IMAGE:4837939" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3856 /gene="PDZD8" /gene_synonym="bA129M16.2" /gene_synonym="FLJ34427" /db_xref="GeneID:118987" /db_xref="HGNC:HGNC:26974" CDS 203..3667 /gene="PDZD8" /gene_synonym="bA129M16.2" /gene_synonym="FLJ34427" /codon_start=1 /product="PDZ domain containing 8" /protein_id="AAH28375.1" /db_xref="GeneID:118987" /db_xref="HGNC:HGNC:26974" /translation="MGLLLMILASAVLGSFLTLLAQFFLLYRRQPEPPADEAARAGEG FRYIKPVPGLLLREYLYGGGRDEEPSGAAPEGGATPTAAPETPAPPTRETCYFLNATI LFLFRELRDTALTRRWVTKKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTI RLVRPVVPSATGEPDGPEGEALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYL FVKLSRVVGRLRLVFTRVPFTHWFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLK KIIKRKHTLPNYKIRFKPFFPYQTLQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLL IFGSYDREANVHCTLELSSSVWEEKQRSSIKTVELIKGNLQSVGLTLRLVQSTDGYAG HVIIETVAPNSPAAIADLQRGDRLIAIGGVKITSTLQVLKLIKQAGDRVLVYYERPVG QSNQGAVLQDNFGQLEENFLSSSCQSGYEEEAAGLTVDTESRELDSEFEDLASDVRAQ NEFKDEAQSLSHSPKRVPTTLSIKPLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPP LKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVPLPSADAPNQAEPDVLVEKPEKVVP PPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKDVTSETSCPTKDSSDDRQTWESS EILYRNKLGKWTRTRASCLFDIEACHRYLNIALWCRDPFKLGGLICLGHVSLKLEDVA LGCLATSNTEYLSKLRLEAPSPKAIVTRTALRNLSMQKGFNDKFCYGDITIHFKYLKE GESDHHVVTNVEKEKEPHLVEEVSVLPKEEQFVGQMGLTENKHSFQDTQFQNPTWCDY CKKKVWTKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDRTLKNLRLEGQETLL GLPPRVDAEASKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPGTDLVEPSPKHTP NTSDNEGSDTEVCGPNSPSKRGNSTGIKLVRKEGGLDDSVFIAVKEIGRDLYRGLPTE ERIQKLEFMLDKLQNEIDQELEHNNSLVREEKETTDTRKKSLLSAALAKSGERLQALT LLMIHYRAGIEDIETLESLSLDQHSKKISKYTDDTEEDLDNEISQLIDSQPFSSISDD LFGPSESV" BASE COUNT 1092 a 931 c 971 g 862 t ORIGIN 1 agcggagcgt ctgaggaggc gcgggccgct gcgggctcgg gcgccgcagc gcgccggccc 61 gagcccctgg acgaggccca cggagccgct cgccccgacc cagccgcccg atgtcctcaa 121 aatggaggca gcgggggcgg cggcgtgaag aaagcggcgc tgtgggcgcg ggagtagggg 181 cccgggcgga ggcggtggcg ggatggggct gctgctcatg atcctggcgt cggccgtgct 241 gggttccttc ctcacgctcc tcgcccagtt cttcctgctg taccgcagac agcccgagcc 301 gccggcggac gaggccgccc gcgcgggcga gggcttccgc tacatcaagc cagtgccggg 361 cctgctccta agggagtacc tttatggcgg cggccgggat gaggagccct ccggagcggc 421 ccctgagggc ggcgcgaccc ccaccgcggc ccccgagacc cccgccccgc cgacgcggga 481 gacttgctac ttcctcaacg ccaccatcct attcctgttc cgggagttgc gggacaccgc 541 gctgacccgc cgctgggtca ccaagaagat caaggtggag ttcgaggagc tgctgcagac 601 caagacggcc gggcgcctgc tggaggggct gagcctgcgg gacgtgttcc tgggcgagac 661 ggtgcccttc atcaagacca tccggctcgt gcggccagtc gtgccctcgg ccaccgggga 721 gcccgatggc cctgaagggg aggcgctgcc cgccgcctgc cccgaggagc tggccttcga 781 ggcggaggtg gagtacaacg ggggcttcca cctggccatc gacgtggacc tggtcttcgg 841 caagtccgcc tacttgtttg tcaagctgtc ccgcgtggtg ggaaggctgc gcttggtctt 901 tacgcgcgtg cccttcaccc actggttctt ctccttcgtg gaagacccgc tgatcgactt 961 cgaggtgcgc tcccagtttg aagggcggcc catgccccag ctcacctcca tcatcgtcaa 1021 ccagctcaag aagatcatca agcgcaagca caccctaccg aattacaaga tcaggtttaa 1081 gccgtttttt ccataccaga ccttgcaagg atttgaagaa gatgaagagc atatccatat 1141 acaacaatgg gcacttactg aaggccgtct taaagttacg ttgttagaat gtagcaggtt 1201 actcattttt ggatcctatg acagagaggc aaatgttcat tgtacacttg agttaagcag 1261 tagtgtttgg gaagaaaaac agaggagttc tattaagacg gttgaattaa taaaaggaaa 1321 tttacaaagt gttggactta cacttcgtct tgtccagtca actgatgggt atgctgggca 1381 cgtcatcatt gaaactgtgg ctccaaactc gcctgctgca attgcagatc ttcagcgggg 1441 agatcgactt atcgccattg gaggtgtgaa aatcacatca acactgcaag tgttgaagct 1501 tatcaagcag gctggtgacc gagtcctggt gtactatgaa aggcctgttg gccagagtaa 1561 tcaaggtgca gtgctgcaag ataactttgg ccagttggaa gaaaactttt tgtcaagctc 1621 atgccaatcg ggttatgaag aggaagctgc cgggttgaca gtagatactg aaagtagaga 1681 gctggattct gaatttgaag acttggcaag tgatgtcaga gcacaaaatg agttcaaaga 1741 tgaggcacaa tcattaagtc atagtcccaa acgtgttcca acaacacttt ctattaaacc 1801 ccttggagct atatcaccag ttttaaaccg taaattagct gtaggaagtc acccactacc 1861 accgaaaatt cagtccaaag atggaaataa acctccaccc ctaaaaactt ctgagataac 1921 agacccagca caagtgtcaa aaccaaccca aggatctgct ttcaaaccac ctgtgccacc 1981 acgaccacaa gcgaaagttc ctttgccttc cgccgatgct ccaaatcagg cagaaccaga 2041 tgttctcgtt gaaaagccag agaaggtggt gccacctcct cttgtagata aatctgctga 2101 aaagcaagca aaaaatgtgg atgccataga cgatgcagct gcacctaagc aatttttagc 2161 aaagcaagaa gtggccaaag atgtcacttc agaaacttcc tgccctacta aggacagttc 2221 ggacgaccgt caaacatggg aatcatcaga aattctttat cgtaataagc taggaaaatg 2281 gacaagaacc agagcatcct gtttgtttga catagaagcc tgtcacaggt acttaaacat 2341 tgcattgtgg tgcagggatc ctttcaagtt gggaggtctc atctgtttgg ggcatgttag 2401 tttaaaactt gaagatgtgg ctttaggatg cctagctaca tcaaacacgg aatacctttc 2461 caaattgaga ctggaagccc cctcacctaa ggctatagtc actagaaccg cactacgcaa 2521 tctgagtatg caaaagggat tcaatgacaa attttgctat ggtgacatta ctattcactt 2581 caaatatttg aaagaaggag aatcagacca ccatgtagtt actaacgtag aaaaagaaaa 2641 agaaccccat ttggttgaag aagtttctgt tctccctaaa gaggagcaat ttgttggaca 2701 gatgggttta acagaaaaca aacacagttt tcaggatact cagttccaga acccaacatg 2761 gtgtgactac tgtaagaaaa aagtttggac taaagcagct tcccagtgta tgttttgtgc 2821 ttatgtttgc cataaaaaat gtcaagaaaa gtgtctagct gagacttctg tttgtggagc 2881 aactgatagg cgaatagaca ggacactgaa aaaccttagg ctggaaggac aggaaaccct 2941 cttaggcctg cctcctcgtg ttgatgctga agctagcaag tcagtcaata aaacaacagg 3001 tttgacaagg catattatca atactagttc tcgtttatta aatttgcgtc aagtctctaa 3061 aactcgcctt tctgaaccag gaaccgatct cgtagaacct tcaccaaaac acacacccaa 3121 cacgtcagac aacgaaggca gtgacacgga ggtctgtggt ccaaacagtc cttctaaacg 3181 gggaaacagc acaggaataa agttagtgag aaaagagggt ggtctggatg acagtgtttt 3241 cattgcagtt aaagaaattg gtcgtgatct gtacaggggc ttgcctacag aggaaaggat 3301 ccagaaacta gagttcatgt tggataagct acagaatgaa attgatcagg agttggaaca 3361 caataattcc cttgttagag aagaaaaaga gacaactgat acaaggaaaa aatcacttct 3421 ttctgctgcc ttagctaaat caggtgaaag gctacaagct ctaacacttc ttatgattca 3481 ctacagagca ggcattgaag atatagaaac tttagaaagt ctgtctttag accagcactc 3541 caaaaaaata agcaagtaca cagatgatac agaagaagac cttgataatg aaataagcca 3601 actaatagac tctcagccat tcagcagcat atcagatgac ttatttggcc catccgagtc 3661 tgtgtagcag acaggtctat ttaaactttc aaatgaacag ggtaaagttg catctaaagt 3721 accacagata caaccatgtt taaatcctcg tatgcactct ggcctgcttc tccagttact 3781 tgcttgtgta agaacaaaaa tgagaaaggt tgttttccag taaaaacatg accagcttac 3841 aaaaaaaaaa aaaaaa //