LOCUS BC028375 3856 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens PDZ domain containing 8, mRNA (cDNA clone MGC:27107
IMAGE:4837939), complete cds.
ACCESSION BC028375
VERSION BC028375.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3856)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3856)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: m Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31341089.
FEATURES Location/Qualifiers
source 1..3856
/db_xref="H-InvDB:HIT000050945"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:27107 IMAGE:4837939"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3856
/gene="PDZD8"
/gene_synonym="bA129M16.2"
/gene_synonym="FLJ34427"
/db_xref="GeneID:118987"
/db_xref="HGNC:HGNC:26974"
CDS 203..3667
/gene="PDZD8"
/gene_synonym="bA129M16.2"
/gene_synonym="FLJ34427"
/codon_start=1
/product="PDZ domain containing 8"
/protein_id="AAH28375.1"
/db_xref="GeneID:118987"
/db_xref="HGNC:HGNC:26974"
/translation="MGLLLMILASAVLGSFLTLLAQFFLLYRRQPEPPADEAARAGEG
FRYIKPVPGLLLREYLYGGGRDEEPSGAAPEGGATPTAAPETPAPPTRETCYFLNATI
LFLFRELRDTALTRRWVTKKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTI
RLVRPVVPSATGEPDGPEGEALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYL
FVKLSRVVGRLRLVFTRVPFTHWFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLK
KIIKRKHTLPNYKIRFKPFFPYQTLQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLL
IFGSYDREANVHCTLELSSSVWEEKQRSSIKTVELIKGNLQSVGLTLRLVQSTDGYAG
HVIIETVAPNSPAAIADLQRGDRLIAIGGVKITSTLQVLKLIKQAGDRVLVYYERPVG
QSNQGAVLQDNFGQLEENFLSSSCQSGYEEEAAGLTVDTESRELDSEFEDLASDVRAQ
NEFKDEAQSLSHSPKRVPTTLSIKPLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPP
LKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVPLPSADAPNQAEPDVLVEKPEKVVP
PPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKDVTSETSCPTKDSSDDRQTWESS
EILYRNKLGKWTRTRASCLFDIEACHRYLNIALWCRDPFKLGGLICLGHVSLKLEDVA
LGCLATSNTEYLSKLRLEAPSPKAIVTRTALRNLSMQKGFNDKFCYGDITIHFKYLKE
GESDHHVVTNVEKEKEPHLVEEVSVLPKEEQFVGQMGLTENKHSFQDTQFQNPTWCDY
CKKKVWTKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDRTLKNLRLEGQETLL
GLPPRVDAEASKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPGTDLVEPSPKHTP
NTSDNEGSDTEVCGPNSPSKRGNSTGIKLVRKEGGLDDSVFIAVKEIGRDLYRGLPTE
ERIQKLEFMLDKLQNEIDQELEHNNSLVREEKETTDTRKKSLLSAALAKSGERLQALT
LLMIHYRAGIEDIETLESLSLDQHSKKISKYTDDTEEDLDNEISQLIDSQPFSSISDD
LFGPSESV"
BASE COUNT 1092 a 931 c 971 g 862 t
ORIGIN
1 agcggagcgt ctgaggaggc gcgggccgct gcgggctcgg gcgccgcagc gcgccggccc
61 gagcccctgg acgaggccca cggagccgct cgccccgacc cagccgcccg atgtcctcaa
121 aatggaggca gcgggggcgg cggcgtgaag aaagcggcgc tgtgggcgcg ggagtagggg
181 cccgggcgga ggcggtggcg ggatggggct gctgctcatg atcctggcgt cggccgtgct
241 gggttccttc ctcacgctcc tcgcccagtt cttcctgctg taccgcagac agcccgagcc
301 gccggcggac gaggccgccc gcgcgggcga gggcttccgc tacatcaagc cagtgccggg
361 cctgctccta agggagtacc tttatggcgg cggccgggat gaggagccct ccggagcggc
421 ccctgagggc ggcgcgaccc ccaccgcggc ccccgagacc cccgccccgc cgacgcggga
481 gacttgctac ttcctcaacg ccaccatcct attcctgttc cgggagttgc gggacaccgc
541 gctgacccgc cgctgggtca ccaagaagat caaggtggag ttcgaggagc tgctgcagac
601 caagacggcc gggcgcctgc tggaggggct gagcctgcgg gacgtgttcc tgggcgagac
661 ggtgcccttc atcaagacca tccggctcgt gcggccagtc gtgccctcgg ccaccgggga
721 gcccgatggc cctgaagggg aggcgctgcc cgccgcctgc cccgaggagc tggccttcga
781 ggcggaggtg gagtacaacg ggggcttcca cctggccatc gacgtggacc tggtcttcgg
841 caagtccgcc tacttgtttg tcaagctgtc ccgcgtggtg ggaaggctgc gcttggtctt
901 tacgcgcgtg cccttcaccc actggttctt ctccttcgtg gaagacccgc tgatcgactt
961 cgaggtgcgc tcccagtttg aagggcggcc catgccccag ctcacctcca tcatcgtcaa
1021 ccagctcaag aagatcatca agcgcaagca caccctaccg aattacaaga tcaggtttaa
1081 gccgtttttt ccataccaga ccttgcaagg atttgaagaa gatgaagagc atatccatat
1141 acaacaatgg gcacttactg aaggccgtct taaagttacg ttgttagaat gtagcaggtt
1201 actcattttt ggatcctatg acagagaggc aaatgttcat tgtacacttg agttaagcag
1261 tagtgtttgg gaagaaaaac agaggagttc tattaagacg gttgaattaa taaaaggaaa
1321 tttacaaagt gttggactta cacttcgtct tgtccagtca actgatgggt atgctgggca
1381 cgtcatcatt gaaactgtgg ctccaaactc gcctgctgca attgcagatc ttcagcgggg
1441 agatcgactt atcgccattg gaggtgtgaa aatcacatca acactgcaag tgttgaagct
1501 tatcaagcag gctggtgacc gagtcctggt gtactatgaa aggcctgttg gccagagtaa
1561 tcaaggtgca gtgctgcaag ataactttgg ccagttggaa gaaaactttt tgtcaagctc
1621 atgccaatcg ggttatgaag aggaagctgc cgggttgaca gtagatactg aaagtagaga
1681 gctggattct gaatttgaag acttggcaag tgatgtcaga gcacaaaatg agttcaaaga
1741 tgaggcacaa tcattaagtc atagtcccaa acgtgttcca acaacacttt ctattaaacc
1801 ccttggagct atatcaccag ttttaaaccg taaattagct gtaggaagtc acccactacc
1861 accgaaaatt cagtccaaag atggaaataa acctccaccc ctaaaaactt ctgagataac
1921 agacccagca caagtgtcaa aaccaaccca aggatctgct ttcaaaccac ctgtgccacc
1981 acgaccacaa gcgaaagttc ctttgccttc cgccgatgct ccaaatcagg cagaaccaga
2041 tgttctcgtt gaaaagccag agaaggtggt gccacctcct cttgtagata aatctgctga
2101 aaagcaagca aaaaatgtgg atgccataga cgatgcagct gcacctaagc aatttttagc
2161 aaagcaagaa gtggccaaag atgtcacttc agaaacttcc tgccctacta aggacagttc
2221 ggacgaccgt caaacatggg aatcatcaga aattctttat cgtaataagc taggaaaatg
2281 gacaagaacc agagcatcct gtttgtttga catagaagcc tgtcacaggt acttaaacat
2341 tgcattgtgg tgcagggatc ctttcaagtt gggaggtctc atctgtttgg ggcatgttag
2401 tttaaaactt gaagatgtgg ctttaggatg cctagctaca tcaaacacgg aatacctttc
2461 caaattgaga ctggaagccc cctcacctaa ggctatagtc actagaaccg cactacgcaa
2521 tctgagtatg caaaagggat tcaatgacaa attttgctat ggtgacatta ctattcactt
2581 caaatatttg aaagaaggag aatcagacca ccatgtagtt actaacgtag aaaaagaaaa
2641 agaaccccat ttggttgaag aagtttctgt tctccctaaa gaggagcaat ttgttggaca
2701 gatgggttta acagaaaaca aacacagttt tcaggatact cagttccaga acccaacatg
2761 gtgtgactac tgtaagaaaa aagtttggac taaagcagct tcccagtgta tgttttgtgc
2821 ttatgtttgc cataaaaaat gtcaagaaaa gtgtctagct gagacttctg tttgtggagc
2881 aactgatagg cgaatagaca ggacactgaa aaaccttagg ctggaaggac aggaaaccct
2941 cttaggcctg cctcctcgtg ttgatgctga agctagcaag tcagtcaata aaacaacagg
3001 tttgacaagg catattatca atactagttc tcgtttatta aatttgcgtc aagtctctaa
3061 aactcgcctt tctgaaccag gaaccgatct cgtagaacct tcaccaaaac acacacccaa
3121 cacgtcagac aacgaaggca gtgacacgga ggtctgtggt ccaaacagtc cttctaaacg
3181 gggaaacagc acaggaataa agttagtgag aaaagagggt ggtctggatg acagtgtttt
3241 cattgcagtt aaagaaattg gtcgtgatct gtacaggggc ttgcctacag aggaaaggat
3301 ccagaaacta gagttcatgt tggataagct acagaatgaa attgatcagg agttggaaca
3361 caataattcc cttgttagag aagaaaaaga gacaactgat acaaggaaaa aatcacttct
3421 ttctgctgcc ttagctaaat caggtgaaag gctacaagct ctaacacttc ttatgattca
3481 ctacagagca ggcattgaag atatagaaac tttagaaagt ctgtctttag accagcactc
3541 caaaaaaata agcaagtaca cagatgatac agaagaagac cttgataatg aaataagcca
3601 actaatagac tctcagccat tcagcagcat atcagatgac ttatttggcc catccgagtc
3661 tgtgtagcag acaggtctat ttaaactttc aaatgaacag ggtaaagttg catctaaagt
3721 accacagata caaccatgtt taaatcctcg tatgcactct ggcctgcttc tccagttact
3781 tgcttgtgta agaacaaaaa tgagaaaggt tgttttccag taaaaacatg accagcttac
3841 aaaaaaaaaa aaaaaa
//