LOCUS BC028354 3251 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens phospholipid scramblase 4, mRNA (cDNA clone MGC:26053
IMAGE:4831340), complete cds.
ACCESSION BC028354
VERSION BC028354.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3251)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3251)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028354.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: k Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9966818.
FEATURES Location/Qualifiers
source 1..3251
/db_xref="H-InvDB:HIT000040530"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26053 IMAGE:4831340"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3251
/gene="PLSCR4"
/db_xref="GeneID:57088"
/db_xref="HGNC:HGNC:16497"
/db_xref="MIM:607612"
CDS 242..1231
/gene="PLSCR4"
/codon_start=1
/product="phospholipid scramblase 4"
/protein_id="AAH28354.1"
/db_xref="GeneID:57088"
/db_xref="HGNC:HGNC:16497"
/db_xref="MIM:607612"
/translation="MSGVVPTAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGT
AVPPPTGYPGGLPMGYYSPQQPSTFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPG
PTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFETNNRYDIKNNSDQMVYIVTEDT
DDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCCCFCCPSARQELEVQCPPGVT
IGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVKSLDGISNIGSII
RKWNGLLSAMADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSPPQRSR"
BASE COUNT 961 a 637 c 602 g 1051 t
ORIGIN
1 cgagacgggg aagccgcgcg cggggaagga gggtccaggc gtgccggacc cgcccccaga
61 acccgcgcct agccctccct tccgcgcgct tactttgttt ataacttgaa aaatcctctc
121 cgtctccctt ccctgcctcc tttcctttcc ctttcctctg ccagtacaac tagacccggc
181 gtctggcgtc cccggtgccc agcattctgc ggggcaggcg gattaattgg aattcttcaa
241 aatgtcaggt gtggtaccca cagcccctga acagcctgca ggtgaaatgg aaaatcaaac
301 aaaaccacca gatccaaggc ctgatgctcc tcctgaatac aattctcatt ttttaccagg
361 accccctgga acagctgtcc ctccacctac tggctaccca ggaggcttgc ctatgggata
421 ctacagtcca cagcaaccca gtaccttccc tttgtaccag ccagttggtg gtatccatcc
481 tgtccggtat cagcctggca aatatcctat gccaaatcag tctgttccaa taacatggat
541 gccagggcca actcctatgg caaactgccc tcctggtctg gaatacttag ttcagttgga
601 caacatacat gttcttcagc attttgagcc tctggaaatg atgacatgtt ttgaaactaa
661 taatagatat gatattaaaa acaactcaga ccagatggtt tacattgtaa ccgaagacac
721 agatgacttt accaggaatg cctatcggac actaaggccc ttcgtcctcc gggtcactga
781 ttgtatgggc cgagaaatca tgacaatgca gagacccttc agatgcacct gctgttgctt
841 ctgttgcccc tctgccagac aagagctgga ggtgcagtgt cctcctggtg tcaccattgg
901 ctttgttgcg gaacattgga acctgtgcag ggcggtgtac agcatccaaa atgagaagaa
961 agaaaatgtg atgagagttc gtgggccatg ctcaacctat ggctgtggtt cagattctgt
1021 ttttgaggtc aaatcccttg atggcatatc caacatcggc agtattatcc ggaagtggaa
1081 tggtttgtta tcagcaatgg cagatgctga ccattttgac attcacttcc cactagacct
1141 ggatgtgaag atgaaagcca tgatttttgg agcttgcttc ctcattgact tcatgtattt
1201 tgaaagatct ccaccacaac gttcaagata gagagacaca gcaagccatc aactatggtt
1261 aattttgaaa aatggaaaag ttggattggg cttacagtca gcactcagtt atttgcaagt
1321 gtatttcttt gctttgtaga gtatttttat tgggtgttaa ctttgacagc tgagagtggg
1381 cttgcaagaa cacaatctaa aagtgtgttt caattgagta tctctctagt agaataggag
1441 ttcatcctga aaagctgtga ctcattaacc cagtaaacat atacaaagta agcttaaaac
1501 actataaaca tgagataagg gaaaatgaat ccagagttct catattaata ggtagtgaaa
1561 caataaggct ttttagagca gactttgttg gcataaaata acctggcttc tatccctaac
1621 cctttcctac ctttcctctc cgtcaacatg tcctcatact gaagacaaac ttgtttcaat
1681 gatagtcttc attttcaaaa acaaaaaggc aggcagacag aaataatgat gttttcttgc
1741 actaagaagg tactacttgt acacatatat caaaacctca ttctgcaaag tttttgaagg
1801 tttcaatggg aaatttgatt ttattacaaa ataaaacatt ttttaatgtt aaagtttata
1861 tattccatgc ttgttttctc attcactggc atggatgatc aggagctgcc tatatatgaa
1921 ggcagaatca gactatcagg aaaggagctg gccagggcca tagccagtca agatctctga
1981 gcaacttaga gacattggtg tcattatatg aagcttgcat ttaatacatt tatacataat
2041 acatttgtac atttaattca taacgtctct tggtcacaga tgccttatat ataaaataag
2101 ttgccagatc tctaagattg cctagtacac ctttgtatct catttgatgt gatacccaga
2161 agagatcatt gttttttgtt tttgtttttg tttttttcaa gaagatcctt cgtgatcacc
2221 atgctgttct catggtaaga actggagtta tgtttttaaa tttggaaata tgacatttta
2281 tgtagcactt tataaaaagt gaaagcgaca aattccaccg ctgcttaata ctgctttgct
2341 tctttttatt gacatgatag ataaatatgt atctacacag agtaataata ataaaacaca
2401 gtaaacattc tatttctcta tggtctacag catgccagta aataatatgt aggaccaata
2461 ataaattatc aattacacat ttttgtgtta actaattaaa agcatagtgt ataagtgagt
2521 acactctaat taacttgctt ctgttgcact ttagttttct acctgcatat ggactgcatt
2581 ttttttttta acacagtcag tatgtagaat gggatgtatt cttctgctgc tgcttattaa
2641 ataaagaaag cctgagtgtt cttagatggg gttattctga gatgagggtc ttagcctaca
2701 gttctttttg aaatgaaagg tgctttgttt tttaattata ttcatctttt cagggtaaat
2761 ttgtttttct gagtttctcg taatgctcat ttttacatgc tgctactagc ttttttttta
2821 aaaaaagtaa aagttgctgc tttctaaaat attaattgcc ttatatttga aagtgccatt
2881 gcaatcgtaa gtagactatg tatttcctat aatgatgtct gatatttaaa taggaaatca
2941 gacaaacaat attcagaaag tttaagcata taaacttttt atttttaact tgcctaaatc
3001 cctgtattcc aaaacctgct gcatcataat aaatatatct atatatattt agcataagac
3061 gtgatatttt taatttcttt tttaaaaaat tatatttgtc tcttagagtt aaaattttct
3121 ttatataata ttgtcatatg tcatagtttt aatacaattc acatgatttc tatgtttctt
3181 aatgatattt tgttgtgtaa aattgatcgg attgattaaa aaacaaattc tctggaaaaa
3241 aaaaaaaaaa a
//