LOCUS BC028239 2375 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant, mRNA (cDNA clone MGC:39866 IMAGE:5244025),
complete cds.
ACCESSION BC028239
VERSION BC028239.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2375)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2375)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: n Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46094083.
FEATURES Location/Qualifiers
source 1..2375
/db_xref="H-InvDB:HIT000040506"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39866 IMAGE:5244025"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2375
/gene="CSTF2T"
/gene_synonym="CstF-64T"
/gene_synonym="DKFZp434C1013"
/gene_synonym="KIAA0689"
/db_xref="GeneID:23283"
/db_xref="HGNC:HGNC:17086"
CDS 31..1881
/gene="CSTF2T"
/gene_synonym="CstF-64T"
/gene_synonym="DKFZp434C1013"
/gene_synonym="KIAA0689"
/codon_start=1
/product="cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant"
/protein_id="AAH28239.1"
/db_xref="GeneID:23283"
/db_xref="HGNC:HGNC:17086"
/translation="MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVS
FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELK
SLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARN
MLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPG
PGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAG
PGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAP
NDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLI
GEPRGPMIDQRGLPMDGRGGRDSRAMETRAMETEVLETRVMERRGMETCAMETRGMEA
RGMDARGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGM
QGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASRQGGSQPSSFSPGQ
SQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS"
BASE COUNT 666 a 522 c 641 g 546 t
ORIGIN
1 ccgctatcgg ctgtctgcac aaccggaatc atgtcgagtt tggcggtgag agacccggca
61 atggatcgat cactgcgttc cgtgttcgtg gggaacattc catatgaggc aactgaggag
121 cagttaaagg acattttctc ggaggttggt tctgttgtca gtttccggct ggtatacgat
181 agagagacgg gaaaacccaa gggctatggc ttctgcgaat accaagacca ggagaccgcg
241 cttagtgcca tgcggaacct caatgggcgg gagttcagtg ggagagcgct tcgggtggac
301 aatgctgcca gtgaaaagaa taaggaggag ttaaagagcc tcgggcctgc agcgcccatt
361 attgactcac cctatgggga tcccatcgat ccagaagatg cccctgaatc gattaccaga
421 gcagtagcca gtctcccccc ggagcagatg tttgagctga tgaagcagat gaagctctgt
481 gtccaaaaca gccaccagga agctcgaaac atgttacttc aaaatccaca actggcttat
541 gcactgttgc aggcacaagt agtgatgaga atcatggatc cagagattgc tctgaaaatt
601 ctgcatcgga agatacatgt cacaccactg atcccaggca aatctcagtc tgtgtctgtc
661 tctggccctg gccctggccc tggccctggg ctctgcccag gacctaatgt tctgctgaac
721 cagcagaatc ctccagctcc tcagcctcag catttggcta gaagacctgt gaaggacatt
781 cctcctctga tgcagactcc tatccagggt ggaattccag ctccagggcc aataccagct
841 gcagttcccg gagctggtcc tggttcctta actcctggag gagcaatgca gccccaactt
901 ggaatgccag gggttggccc agtgccttta gagcggggac aagtgcagat gtcagatcct
961 agagctccta tacctcgcgg acccgtgact cctggtggtc tgcctcctcg aggactgtta
1021 ggagatgctc caaatgaccc acgtggaggg actttgcttt cagtcactgg agaagtggag
1081 cccagaggtt atctgggtcc accccatcag ggtcccccca tgcatcatgc ctctggtcat
1141 gacactcgtg gcccttcctc acatgagatg aggggagggc cattaggaga tcccagactg
1201 ctaattggag agcccagagg ccccatgata gatcaaaggg gtctacctat ggatggtaga
1261 ggtggtagag attctcgagc gatggagact cgcgccatgg aaactgaggt cttagagaca
1321 cgtgtaatgg agaggagagg aatggagacc tgtgcgatgg aaaccagagg gatggaagca
1381 aggggcatgg atgcaagagg attggagatg aggggccctg tccccagttc aagaggccct
1441 atgactggtg gaattcaggg tcctggtccc attaatatag gggcaggtgg ccctcctcag
1501 ggacccagac aggtcccagg catttcaggg gtggggaatc ctggagctgg tatgcagggt
1561 acaggcatac aaggaacagg catgcaggga gcaggcatac aaggaggagg gatgcagggg
1621 gcaggcatac aaggagtcag tatacaagga ggaggtatac aaggaggagg tatacagggg
1681 gcaagcaggc aaggtggaag ccagcctagc agttttagtc ctgggcagag ccaggtcact
1741 ccacaggatc aggagaaggc agctttgatc atgcaggttc ttcaactgac tgcagatcag
1801 attgccatgc tgccccctga gcaaaggcag agtatcctga ttttaaagga acaaatccag
1861 aaatccactg gagcgtcttg aaaggtttta gaaaatattt ggctgtagtc tcaaatttta
1921 ttctgtagca tggagaatgg gtgcaaaaag ctgacttctg tatccccaca cttggattag
1981 ggtttccctc ctcctagaac ctaatcttat tttttgttct ttttctttct ttctgttttc
2041 cttttttttt aattgagggt ggggggagga gggagtgcgt ctgttcactt taagttactt
2101 taaaataact ctgaacatga ttatattatg ccaaataaga ttacaaagaa taagcagcaa
2161 tattgaagca tctacagtat gttaactaca ttttttaaat gtcgagtaaa actttgtgaa
2221 aactgctcat aaagactaaa agttgacctg ttaaaacgtt aatgtactaa gatagtttta
2281 agatttttgg ttgtataaca aaataaaagt ttacccaaaa aaaaaaaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//