LOCUS BC028194 1790 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens vasohibin 2, mRNA (cDNA clone MGC:39884
IMAGE:5164251), complete cds.
ACCESSION BC028194
VERSION BC028194.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1790)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1790)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: d Column: 20
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1790
/db_xref="H-InvDB:HIT000050939"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39884 IMAGE:5164251"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1790
/gene="VASH2"
/gene_synonym="RP11-275G3.1"
/db_xref="GeneID:79805"
/db_xref="HGNC:HGNC:25723"
/db_xref="MIM:610471"
CDS 300..770
/gene="VASH2"
/gene_synonym="RP11-275G3.1"
/codon_start=1
/product="VASH2 protein"
/protein_id="AAH28194.1"
/db_xref="GeneID:79805"
/db_xref="HGNC:HGNC:25723"
/db_xref="MIM:610471"
/translation="METAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYF
SGNYFHHVVLGIYCNGRYGSLGMSRRAELMDKPLTFRTLSDLIFDFEDSYKKYLHTVK
KVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRADIRKELEKYARDMRMKGLCSH"
BASE COUNT 501 a 459 c 445 g 385 t
ORIGIN
1 gcagccccag ccccagcccc aggcccagca gcagcagcag cagcccctgc tctcccgccg
61 cccggagagg ctctgcagcc atgaagccaa ccgtcccgag ccttcaatac cccaggtccc
121 aaactacagg ctgtcgatga cgatcccaga ctggctccag gcgatccaga attacatgaa
181 gaccctacag tatccttcca accaaggtct gagcacaccc agccagggga caggcatggt
241 gatcgcaagc ctggtggcaa atctgtcccc agctggtcat caaaagctct ctaaggttaa
301 tggaaacagc aaaagaaatg acccgagagt ccttgcctat caaatgcctt gaagctgtca
361 tcctgggcat ctacttaacc aatgggcagc cttccattga gcggttcccc atcagcttta
421 aaacctactt ctcaggaaac tactttcacc acgttgtgct ggggatttac tgcaatggcc
481 gctatggctc attgggcatg agccgcaggg ctgagctgat ggacaagcca ttgacttttc
541 ggactctgag tgacctcatc tttgactttg aggactctta caagaaatac ctgcacacag
601 tcaagaaggt caagattggg ctgtacgtcc cccatgagcc tcatagcttc cagcccattg
661 agtggaagca gctggtcctc aacgtctcaa agatgctgag ggctgacata aggaaggagc
721 tggagaaata tgccagggac atgagaatga agggcttgtg cagtcactaa gagaaaagga
781 ttatgctgac ttcaggcctg gctatgttta gcacttgtgg acttgtcatc ttcactctgc
841 aggacctgga gtggagattc ctgatcaatt aaaaccattc tgtcatatgt gtgggatggg
901 agcatcagag gaagaacagg ctggtttctg aggcaataga gatgggactt tgccttcgtg
961 aggagaggaa cttgccaagc aaacaaacac agccccgggg agactgaggc attgggctgt
1021 gttcctctct ctacacggca cagggagcac aatgtgacca tctgtatatc tgtcttggaa
1081 gtggtgccct tgctgcttga cagtacagga cgagagagga atgtgtgtgt ctccagcctc
1141 cttttttaga agtcttcctg ctcaatgcct tctaaaccat ggcatcatga ttgggctggg
1201 gggtggaatg tggtgctaga agaagacctg agggtggagg tcccttagga accagggtga
1261 ttaactcctc acatctcctt cagatcctga aacctgcaag tgcccactct ccgacccaag
1321 tgagaagccg gggaaaatcc ctgtccccca gaaggagaca ggcaagcccc ccgaggaggc
1381 tcggccggcg agagaagtcc cctgaggcca gtgatcccac atctacttct tagaccaaaa
1441 taacccactt aagcaatgac agattggaga tgctggggat gcccaaattc accagcgata
1501 atccgctggc aaatatttga actatagcca tcctgggaaa aaatactgct tttcttaata
1561 atagcagcat gctgtgtcac ccagcctctt gccatgctgg aaccatgtgg cacagtgcac
1621 agggggcttg gttgaatccc aactgtgcca cgtgttagct gtgcagctgg gcacatcctt
1681 cctcctcggg gagccttggt ttcttcatcc ataaaagagt atcaaatgct aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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