LOCUS BC028191 1227 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens forkhead box R1, mRNA (cDNA clone MGC:40176
IMAGE:5167039), complete cds.
ACCESSION BC028191
VERSION BC028191.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1227)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1227)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: d Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61743928.
FEATURES Location/Qualifiers
source 1..1227
/db_xref="H-InvDB:HIT000091534"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40176 IMAGE:5167039"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1227
/gene="FOXR1"
/gene_synonym="DLNB13"
/gene_synonym="FOXN5"
/db_xref="GeneID:283150"
/db_xref="HGNC:HGNC:29980"
CDS 225..1103
/gene="FOXR1"
/gene_synonym="DLNB13"
/gene_synonym="FOXN5"
/codon_start=1
/product="forkhead box R1"
/protein_id="AAH28191.2"
/db_xref="GeneID:283150"
/db_xref="HGNC:HGNC:29980"
/translation="MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDK
DGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAG
VESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPLQSRRL
RQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPEGWK
NTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESI
QQCMSQPDVMPFLFDL"
BASE COUNT 335 a 380 c 293 g 219 t
ORIGIN
1 aatggaccgc tccacacctg agctgccgcc aagctaactc aatccgagcc ggcgcatttg
61 agaaggcgcc tgtgagggtc gctcctcagc cgccgcgctc ccactccgcg tccccactcc
121 gcgccgccgc gcctctgcca gccccgaagg tggacgtgaa gctccaacac ctcgacttct
181 gggcccgcct ccatggccag gtcccgggac tgctggactg ggacatgggg aacgagctct
241 ttctggcctt caccacatct cacctcccct tagcggagca gaaacttgcc aggtataaac
301 tccgaattgt taagccacca aaattacccc tagagaaaaa acccaaccct gataaggatg
361 gtccagatta tgagcccaac ctctggatgt gggtaaatcc caacattgtg tatccccctg
421 gaaagctgga ggtctcagga cgtaggaaga gggaggacct gacaagcaca ctcccctcct
481 ctcagccacc ccagaaggag gaagatgcca gctgctcaga ggccgcaggg gtggaatcac
541 tgtcccagtc ctccagcaag cggtctcccc ctcggaagcg gtttgccttt tcccccagca
601 cctgggagct cacagaagag gaggaggctg aggaccagga agacagctcc tctatggctc
661 tcccatcccc tcacaaaagg gcccccctcc agagtcggag gcttcggcaa gccagcagcc
721 aggcggggag gctctggtcc cggccccctc tcaattactt ccacctaatt gccctggcat
781 taagaaacag ttccccctgt ggcctcaacg tgcaacagat ctacagtttc actcgaaagc
841 acttcccctt tttccggacg gccccggaag gctggaagaa tactgtccgt cacaatctct
901 gttttcgaga cagctttgag aaagtgcctg tcagcatgca gggcggggcc agcacacggc
961 ctcgatcttg cctctggaag ttgaccgagg agggacaccg ccgctttgcg gaggaggccc
1021 gcgccttggc ttccactcgg ctagaaagta tccaacagtg catgagccag ccagatgtga
1081 tgcccttcct ctttgatctt taaccccaag aagcaacagc cagctaatgc tttattaaaa
1141 ttaccctcac taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaaaaa aaaaaaaaaa aaaaaag
//