LOCUS BC028183 4869 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:4508322), partial cds.
ACCESSION BC028183
VERSION BC028183.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4869)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4869)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: b Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..4869
/db_xref="H-InvDB:HIT000091526"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4508322"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4869
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..3190
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=2
/product="SEC16A protein"
/protein_id="AAH28183.1"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="HASARVRDPRTYDRRYWCDAEYDAYRREHSAFGDRPEKRDNNWR
YDPRFTGSFDDDPDPHRDPYGEEVDRRSVHSEHSARSLHSAHSLASRRSSLSSHSHQS
QIYRSHNVAAGSYEAPLPPGSFHGDFAYGTYRSNFSSGPGFPEYGYPADTVWPAMEQV
SSRPTSPEKFSVPHVCARFGPGGQLIKVIPNLPSEGQPALVEVHSMEALLQHTSEQEE
MRAFPGPLAKDDTHKVDVINFAQNKAMKCLQNENLIDKESASLLWNFIVLLCRQNGTV
VGTDIAELLLRDHRTVWLPGKSPNEANLIDFTNEAVEQVEEEESGEAQLSFLTGGPAA
AASSLERETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFAN
SLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMAT
MGDTLASRGLLDAAHFCYLMAQAGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRT
EAYEYAQSLGAETCPLPSFQVFKFIYSCRLAEMGLATQAFHYCEAIAKSILTQPHLYS
PVLISQLVQMASQLRLFDPQLKEKPEEESLAAPTWLVHLQQVERQIKEGAGVWHQDGA
LPQQCPGTPSSEMEQLDRPGLSQPGALGIANPLLAVPAPSPEHSSPSVRLLPSAPQTL
PDGPLASPARVPMFPVPLPPGPLEPGPGCVTPGPALGFLEPSGPGLPPGVPPLQERRH
LLQEARSPDPGIVPQEAPVGNSLSELSEENFDGKFANLTPSRTVPDSEAPPGWDRADS
GPTQPPLSLSPAPETKRPGQAAKKETKEPKKGESWFFRWLPGKKKTEAYLPDDKNKSI
VWDEKKNQWVNLNEPEEEKKAPPPPPTSMPKTVQAAPPALPGPPGAPVNMYSRRAAGT
RARYVDVLNPSGTQRSEPALAPADFVAPLAPLPIPSNLFVPTPDAEEPQLPDGTGREG
PAAARGLANPEPAPEPKVLSSAASLPGSELPPSRPEGSQGGEAPGDLPAAGGPPSGAM
PFYNPAQLAQACATSGSSRLGRIGQRKHLVLN"
BASE COUNT 1106 a 1374 c 1321 g 1068 t
ORIGIN
1 ccacgcgtcc gctagagtca gggacccccg cacctatgac cggaggtatt ggtgtgatgc
61 agagtatgac gcatacagga gagagcactc tgccttcggg gacaggcccg agaaacgtga
121 caacaactgg aggtacgatc ctcgcttcac ggggagtttt gacgatgacc ccgatccgca
181 cagagaccct tatggggaag aggtggaccg gcgcagcgtc cacagcgagc actcggcacg
241 gagcctgcac agcgcacaca gcctggccag ccgccgcagc agcctcagct cccactcgca
301 ccagagtcag atttacagaa gccacaatgt ggctgccggt tcctacgagg ccccgcttcc
361 tccaggctcc tttcacggcg attttgccta cggcacctac cgcagcaatt tcagcagtgg
421 ccccggcttc ccagagtatg gctaccctgc cgacaccgtc tggcctgcca tggagcaagt
481 ttcatcaaga ccaacttctc ctgaaaaatt ttcagtgcct catgtctgtg ccaggtttgg
541 ccctggcggt cagcttatca aagtgattcc caatctgcct tcagaaggac agccggcctt
601 ggtggaggtc cacagcatgg aggccttgct gcagcacacg tctgagcagg aggagatgcg
661 ggcgttcccg ggacccctgg ccaaagacga cacccataag gtggatgtca ttaattttgc
721 acagaacaaa gctatgaaat gtttgcagaa tgaaaactta attgacaaag agtctgcaag
781 tcttctttgg aattttattg ttctcttatg cagacaaaat gggaccgtgg tagggaccga
841 cattgcggag cttctgttac gagaccacag aacagtgtgg cttcctggga agtcgcccaa
901 tgaagcaaac ctgattgatt tcacgaatga ggcagtggag caggtggaag aggaggagtc
961 tggtgaggcc cagctctctt tcctcactgg tggtccggcg gctgccgcca gctcgctcga
1021 gagagagacc gagaggttca gggagctgtt gctgtatggc cgtaagaagg atgctttgga
1081 gtctgcaatg aagaatggcc tgtggggtca cgctctgcta cttgcaagta agatggacag
1141 ccggacacac gcccgagtca tgaccaggtt tgctaacagc ctcccaatca acgaccctct
1201 gcagacagtc taccagctca tgtccggacg gatgcctgcc gcgtccacgt gctgtggaga
1261 cgagaaatgg ggagattgga ggccgcacct cgccatggtc ttgtccaact tgaacaacaa
1321 catggacgtc gagtccagga cgatggctac catgggcgac actctggctt caaggggcct
1381 cttggatgcg gcccacttct gctacctcat ggcccaggcg ggatttggtg tttacacgaa
1441 gaaaactaca aagcttgtct taatcggatc caatcacagt ttgccattct taaagttcgc
1501 aaccaacgaa gcaatccaga ggacggaagc ctatgagtac gcccagtccc tgggtgccga
1561 gacctgcccc ctgcctagtt tccaggtgtt taagttcatc tactcctgcc gcctggcgga
1621 aatggggctg gccacgcaag ccttccacta ctgtgaggcc atcgcgaaga gcatcctgac
1681 gcagccgcac ctgtattccc cggtgttgat cagccagctt gtgcagatgg cttcccagtt
1741 acgactcttc gatccccagc tgaaagagaa gccagaagag gagtccttgg ccgcacccac
1801 gtggctggtt cacctgcagc aggtggagcg gcagattaag gagggggctg gagtatggca
1861 tcaggatgga gccctcccgc agcagtgtcc tggcactccg agttccgaga tggagcagtt
1921 ggacaggcca ggactcagtc agccaggagc cctggggatc gccaaccctc tgctggcggt
1981 gcctgcaccg agccctgagc actcgagccc gagcgtgcgg ctgctgccct cagctccgca
2041 gacgctccct gacggcccat tggccagtcc tgccagagtg ccgatgttcc cagtgccact
2101 gcccccgggg cccctggagc cgggtcctgg ctgtgtgacc ccagggcctg cacttggctt
2161 cctggagccc tccgggcctg gcctcccacc tggtgtgcca cctctgcagg aaaggagaca
2221 cttgctccag gaagccagga gcccagaccc agggatagtg ccgcaggagg cgcctgttgg
2281 aaactcactt tccgagctaa gcgaagaaaa ttttgatgga aaatttgcta atctgacccc
2341 ctcgaggacg gtgccagact cggaggcccc cccagggtgg gatcgtgccg actcgggtcc
2401 cacgcagcca cctctgtctc tctcacccgc tcccgaaaca aagagacccg gacaggcagc
2461 caagaaagaa acgaaggaac ctaagaaggg tgaatcctgg ttctttcgtt ggctacctgg
2521 aaagaaaaag acagaagctt atttgccaga tgacaagaac aaatcgattg tttgggatga
2581 aaagaaaaac cagtgggtga atttaaatga gccagaagag gagaagaaag ccccgccccc
2641 acctccaacc tcgatgccca agactgtgca agctgccccg cctgccctcc cagggcctcc
2701 tggagccccc gtgaacatgt actctagaag agcagcagga accagagctc gctacgttga
2761 cgtcctgaac ccaagcggga cccagcggag cgagccggct ctcgctcctg cggactttgt
2821 cgctccactc gcgccactcc caattccttc taacttgttc gtgccaaccc cagatgcaga
2881 agaaccacag cttccagacg ggactggcag ggaagggcct gcagcagcta ggggcctggc
2941 caatccagag cctgccccag agcccaaggt tttaagctct gcagcgtcac tccctggctc
3001 tgaactcccc ccctccaggc ctgagggttc ccagggagga gaggctcctg gcgacctccc
3061 tgctgcaggg ggccctccca gcggggccat gcccttctac aaccctgctc agctggcaca
3121 ggcctgcgcc acctccggga gctcaaggct agggaggatt ggccagagga agcacctggt
3181 gctgaactag gcttgccctg ctgtgaactt gcacttggag ccctgacgct gctgttctcc
3241 ccgaagaacc cgaccgacct ccgcgatctc cgtcccgccc ccagggagac acagcagtga
3301 ctcagagctg gtcgcacact gtgcctccct cctcaccgcc catcgtaatg aattattttg
3361 aaaattaatt ccaccatcct ttcagattct ggatggaaag actgaatctt tgactcagaa
3421 ttgtttgccg aaaagaatga tgtgactttc ttagtcattt aggatgattt aaggatatag
3481 tattcctggt catttaagaa tgttcattca ttgaagccgg agctgtctct gccacaggag
3541 agccacatgg tcggtagtaa ccagggcctc tccaagccca gctgtgagtc actgcccagt
3601 gagtcccgcg cttcctttaa ggtgctggga gcaaagagag ggtgactgag gcagacccca
3661 acccctgctc tgcaccatct gggccctcgc cgtgtttgaa cctggctgaa tgagtggagg
3721 gcgctgtgtt ctcaatcagc gcctccgagg agccgtgggg ttccttcggc attagttcac
3781 ggtttttgag agaggcctta gttactgcag tgaatttctt tcctgttgca aagacgcttc
3841 cagcctcact ttactttctg tggcctgatg aggaccatgg gtgattttgt gtacccaaag
3901 cgctggggac tgcccaccgt gtggcccagt cactgggaag gagccccaga gagccggctg
3961 tctgacatga tggctcaggg tggtcatcca ggttgaaaac tgaccgtgtg atgtttgatt
4021 tgggcttcat ttcgtgtgta ggagcacggt tagactcact gttaaggaag ctggatgcac
4081 ttctctaaaa ggctgcactt tccgtgagca cttttcgtgg tacaatccac atgacccact
4141 ttctcccctg ggggacgttg gttcagaggt tggtagcact tggggagagt atcttaacac
4201 agtttcttga cagcagctct ggaacttagt atttctgccc cgagttttgc cacactgaga
4261 ctttgagtag ctcctggtgg actcaaccct gttcaactca gagacgggcc tcctctcact
4321 gatgcaaagc tttaaggctt ctctgactgt tctgaaactc ttcgtattct tgtcaagtct
4381 aaagagactg aagaaaagat ttaaatacta ataaaaatca gtagataatt tctgtaggtt
4441 ctgctggagg aatacaaact gtttggtgtt ttaaatttaa gtgtagaaat tgtagaatgt
4501 ggaattagca cagatccttc ctggctttct gtttcacttg atcatttagc ccagaccacc
4561 caggatgttt tccaaaatgt tccacaggcg tgtcccgctg gatccatttg tccttgtcac
4621 ttggagaaag gccagtccct gtgacggggc agccctctct gtccctcggt cagctcgtgt
4681 gaatcctggg acctcttccg gtcggctctg cccgctgttc tggggtcgac tgccacgact
4741 tttgattcaa gaagcttcct ccaggcggga gcggctattt ttcctaaatg agaattgtta
4801 cattgcaaat tgttgaataa aatattttgc gctccttcaa aaaaaaaaaa aaaaaaaaaa
4861 aaaaaaaaa
//