LOCUS BC028142 2285 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens carbonic anhydrase VB, mitochondrial, mRNA (cDNA clone
MGC:39962 IMAGE:5214534), complete cds.
ACCESSION BC028142
VERSION BC028142.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2285)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2285)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028142.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37577155
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2285
/db_xref="H-InvDB:HIT000040461"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39962 IMAGE:5214534"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2285
/gene="CA5B"
/gene_synonym="CA-VB"
/db_xref="GeneID:11238"
/db_xref="HGNC:HGNC:1378"
/db_xref="MIM:300230"
CDS 55..1008
/gene="CA5B"
/gene_synonym="CA-VB"
/codon_start=1
/product="CA5B protein"
/protein_id="AAH28142.1"
/db_xref="GeneID:11238"
/db_xref="HGNC:HGNC:1378"
/db_xref="MIM:300230"
/translation="MVVMNSLRVILQASPGKLLWRKFQIPRFMPARPCSLYTCTYKTR
NRALHPLWESVDLVPGGDRQSPINIRWRDSVYDPGLKPLTISYDPATCLHVWNNGYSF
LVEFEDSTDKSVIKGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCFPAELHLVHWN
AVRFENFEDAALEENGLAVIGVFLKLGKHHKELQKLVDTLPSIKHKDALVEFGSFDPS
CLMPTCPDYWTYSGSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKR
MVDNFRPLQPLMNRTVRSSFRHDYVLNVQAKPKPATSQATP"
BASE COUNT 683 a 470 c 461 g 671 t
ORIGIN
1 gattattaag ttcctgcaac ttaactggga actgatcaag atttcaagct aaagatggtg
61 gtgatgaaca gcctgagggt cattcttcaa gcctctccag gcaaattgct gtggagaaag
121 ttccagattc cgagattcat gccagcgagg ccctgcagcc tctatacttg tacttacaaa
181 acccggaacc gagccttgca tccactctgg gagagcgtgg acctggttcc tgggggcgat
241 cgccagtcac ccatcaacat tcggtggagg gacagtgttt atgatcccgg cttaaaacca
301 ctgaccatct cttatgaccc agccacctgc ctccacgtct ggaataatgg gtactctttc
361 ctcgtggaat ttgaagattc tacagataaa tcagtgatca agggaggacc cctggaacac
421 aactaccgat tgaagcagtt ccattttcac tggggggcca tcgatgcctg gggttctgag
481 cacaccgtgg acagcaaatg cttcccagca gagctgcact tagtgcattg gaacgcagtc
541 agatttgaaa actttgagga tgcagcactg gaagaaaatg gtttggctgt gataggagta
601 tttttaaagc taggcaaaca tcataaggag ctacagaaat tagtggatac tttgccgtca
661 attaagcata aggacgccct tgtggaattt gggtcatttg acccttcctg cctgatgcct
721 acctgcccag attactggac ctactcaggg tctctgacta ccccacccct ctccgagtct
781 gtcacctgga tcattaagaa gcaaccagta gaggttgatc atgatcagct tgagcaattt
841 cggaccctgc ttttcacttc cgaaggggag aaagagaaaa gaatggtgga caacttccgc
901 ccccttcagc cactgatgaa tcgcactgtt cgttcatcct tccggcatga ttatgtgctg
961 aatgtacaag cgaaacccaa gccggccacc agccaagcaa ccccctaaaa cattcatatc
1021 taggcagtat tttgcttttg ctttaatata tactagctta ctataaattg ttaactagac
1081 tattctaagt gcctgcattt gataatattt acagatgtgc atttcttagc atgagagtgc
1141 ttcatcagtc tttgaggaag gctattcggt accagcaaga gacacaagtt tctcttacag
1201 atacctgttg gtaattgtaa tgcctttttt ttttctttaa gagactaggt cttgctctgc
1261 tgcccaggct agagtgcagt ggccaaatga tagctcactg cagccttgaa ctcctgggct
1321 caagcagtcc tcctgcctta gcctctagag tagctggggc tacaggtgct ggccgcctgg
1381 cccagcttgt aatatctttt tatgtctgac atttttgagc tatcttttta tgtttatcca
1441 ttagtggttc tatagcacta tacataggga ttataatcaa aatttttaac atgtggtaag
1501 gcacagacac tgaccagaac tcaggccttg cagaaacagc ctatgggccc cgactggtac
1561 ttcctggctg aatattggcc atggttttag atgtatttta ttttataaca tgaatgtgta
1621 ttctttcata agggcttatc agtcagtata tttgccccag tgtttagttg ttacaaggac
1681 atgatatgct tacttactat cagtttatga tgtagaaaat atattttgta attataagaa
1741 aacaagactt ttcctatacc cagaaatccc tttgcatttc cgaagatcag atattttgct
1801 taaaggtctg atcatatagg aaatatatgc agaacatttt aaagaaaatg cccggccttc
1861 cagaaatatt tttcaaagga ctagtaatct aatagcctat agtttatatt attattttgt
1921 attatttgca cgctgttaca tagtatataa tgataatgtt ttctacagtg aaagagctat
1981 cccgtcttcc ctttacaact gtctgaactt tatttactca ttagtcaagg ttctttgcaa
2041 ggcaggtgat taacttaaat atctcagttt atacagtggt ttaaaagact tttgttatgg
2101 taatagggag agaaacttgt cagataggct aaaatctaga taattctaca tattctgagg
2161 aattcatgct cctgtggctc ttgcttataa atatcttgga atgttaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaa
//